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<title>EliScholar – A Digital Platform for Scholarly Publishing at Yale</title>
<copyright>Copyright (c) 2017 Yale University All rights reserved.</copyright>
<link>http://elischolar.library.yale.edu</link>
<description>Recent documents in EliScholar – A Digital Platform for Scholarly Publishing at Yale</description>
<language>en-us</language>
<lastBuildDate>Sun, 09 Jul 2017 01:45:12 PDT</lastBuildDate>
<ttl>3600</ttl>


	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	

	
		
	




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<title>Moving Beyond Cancer-Free: Evolving Paradigms In Pediatric Oncology And Cancer Survivorship</title>
<link>http://elischolar.library.yale.edu/ymtdl/2188</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2188</guid>
<pubDate>Thu, 06 Jul 2017 09:40:13 PDT</pubDate>
<description>
	<![CDATA[
	<p>As cure rates for childhood cancers have improved dramatically in recent decades, there is growing recognition that “cancer-free” cannot be the only metric of success for treating these patients. There remains a significant burden of cure both during treatment from acute toxicities, as well as decades after treatment has ended from chronic sequelae. This thesis comprises five studies utilizing a range of both quantitative and qualitative methods in the pediatric cancer population to illustrate the active challenges and considerations in this patient population.</p>
<p>A prospective cohort study in children with acute lymphoblastic leukemia demonstrates a significant quality of life burden during therapy by showing that many of these patients experience impairment in physical and emotional functioning. A retrospective cohort study in neuroblastoma survivors finds significant cognitive and behavioral impairment, highlighting the prevalence and severity of long-term effects from treatment. Two studies examining data from Yale’s childhood cancer survivorship clinic show that health services for these patients is a major challenge, as the majority of patients do not attend survivorship clinic even up to 10 years post-diagnosis, and the primary care providers of survivors generally feel uncomfortable being responsible for survivorship care. Lastly, a pilot study utilizing activity trackers in pediatric cancer survivors demonstrates the potential feasibility and efficacy of such an intervention to increase exercise in hopes of mitigating late effects. This study represents the type of future research that may help lessen the burden of therapy-related chronic conditions.</p>
<p>Moving forward, successful cancer treatment in children must address quality of life costs and therapy-related chronic conditions, in addition to managing the disease itself. This evolving paradigm in pediatric oncology requires future research in both optimizing health services for this patient population, as well as interventions during and after treatment to help minimize long-term toxicities.</p>

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<author>Daniel Zheng</author>


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<title>The Natural History And Predictors Of Liver Fibrosis Progression Using The Fib-4 Score Among Hiv/hcv Co-Infected Adults In An Outpatient Clinic</title>
<link>http://elischolar.library.yale.edu/ymtdl/2187</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2187</guid>
<pubDate>Thu, 06 Jul 2017 09:40:10 PDT</pubDate>
<description>
	<![CDATA[
	<p>Background: Studies have documented more rapid progression of HCV-associated liver fibrosis in patients co-infected with HIV. However, the natural history of HCV infection in both mono-infected and HIV co-infected patients remains highly variable. The patterns and predictors of fibrosis progression in the HIV/HCV co-infected population are not fully characterized. Given the invasiveness of serial liver biopsies, Fibrosis-4 score (FIB-4), a composite of serum biomarkers that correlate well with fibrosis stage, is increasingly used. We used FIB-4 to study the natural history of liver fibrosis progression among co-infected patients and evaluated predictors of progression to cirrhosis over 5 years prior to treatment with direct acting agents (DAAs).</p>
<p>Methods:  Study subjects were selected from HIV/HCV co-infected patients receiving care at Yale-New Haven Hospital from February 2014 through April 2016 without advanced fibrosis 5 years prior to study entry. Annual FIB-4 scores dating back 5 years were calculated from the most recent FIB-4 score or the last FIB-4 prior to DAA treatment initiation. Baseline demographics and clinical characteristics including HCV genotype, antiretroviral regimen, HIV viral loads and CD4 counts were collected. Patients were further categorized based on FIB-4 progression over the course of 5 years. Univariate and multivariable logistic regression models were used to examine factors associated with FIB-4 progression and a p-value of 0.05 was chosen as the threshold for statistical significance.</p>
<p>Results:  There were 93 patients evaluated including 65 men and 28 women; mean age of 56.7 years; 32.3% were white, 53.8% were black. Injection drug use (IDU) was the major risk factor for HCV acquisition (63.4%) and the most common genotype was genotype 1 (81.2%). The median CD4+ count was 564 cells/mm3, and the majority (88.4%) had HIV viral loads <50 copies/mL. Over 5 years, 25 (26.9%) had FIB-4 progress to >3.25 and 68 (73.1%) had FIB-4 remain <3.25. Demographic variables (age, gender, race/ethnicity, BMI, substance use), clinical variables (HIV viral load, CD4 count, ART use, HIV duration, HCV duration and viral load) and co-morbid conditions such as diabetes and hyperlipidemia did not differ significantly between those whose FIB-4 stayed below 3.25 and those whose FIB-4 progressed to above 3.25 in univariate and multivariable logistic regression models.</p>
<p>Conclusion: In this study of 93 HIV/HCV co-infected patients without baseline advanced fibrosis, 26.9% progressed to advanced fibrosis over the course of 5 years. We did not identify any statistically significant factors that predicted those who were more likely to progress, although clinically relevant factors such as absence of HIV virologic control, low CD4 count, and lack of statin use showed a trend towards significance and should be assessed in future studies in a larger cohort. Our findings highlight the importance of prioritizing all patients with HCV/HIV co-infection for HCV treatment.</p>

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<author>Bianca Yuh</author>


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<title>Prevention Of Bacterial Translocation By Obeticholic Acid In Rats With Cirrhosis</title>
<link>http://elischolar.library.yale.edu/ymtdl/2186</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2186</guid>
<pubDate>Thu, 06 Jul 2017 09:40:06 PDT</pubDate>
<description>
	<![CDATA[
	<p>We hypothesized that the oral administration of obeticholic acid vs. placebo in a rat model of cirrhosis with ascites would decrease gut bacterial translocation and lead to changes in the intestinal microbiome, specifically the number and type of bacteria.</p>
<p>Male Harlan Sprague-Dawley rats weighing 100-125g underwent the induction of cirrhosis via inhalation of carbon tetrachloride (CCl4) three times a week until the development of ascites. Animals with ascites were randomized to placebo (methylcellulose solution) or obeticholic acid, administered by orogastric tube at a dose of 5mg/kg/day for 14 days. Stool samples were collected at weeks 1, 2, 4, and 7; at the development of ascites; 1 week into treatment; and at the time of sacrifice. At the end of the 14-day treatment period, animals underwent non-survival surgery with general anesthesia (isoflurane open-drop, followed by ketamine (75mg/kg)/xylazine (5mg/kg) intramuscularly) and strict aseptic conditions. Ascites fluid, blood, and mesenteric lymph nodes were cultured to assess for bacterial growth, a sign of bacterial translocation. Samples from the intestine and colon underwent 16S amplification and sequencing to assess the microbiome. The liver was fixed for histopathological analysis.</p>
<p>A first group of 20 rats was used to establish the experimental model of cirrhosis. These animals completed the induction process with 20-22 weeks of exposure to carbon tetrachloride by inhalation per Dr. Iwakiri’s lab, Lopez-Novoa1 and Garcia-Tsao et al2. However, the dose of CCl4 administered was too low to yield meaningful ascites; the rats consistently gained weight and did not exhibit any of the physical or behavioral hallmarks of animals with decompensated cirrhosis. Timepoint stool microbiome studies were completed on these animals, showing decreases in some beneficial species, such as Bacteroides, but not others, such as Lactobacillus and Bifidobacterium; and insignificant changes in Proteobacteria. After some troubleshooting, we pursued a more aggressive approach to exposing the animals to carbon tetrachloride by inhalation, involving exposing them to enough gas to anesthetize them starting week 4 of the induction process. At the time of this writing, 11 of 40 animals had developed ascites, 6 were undergoing treatment, and 1 had undergone laparotomy and sample collection.</p>
<p>We have so far established a more efficient way of inducing cirrhosis with ascites compared to the one recommended by Dr. Iwakiri’s lab. The induction of cirrhosis by carbon tetrachloride inhalation in rats requires escalating doses of the gas to reach the amount necessary to cause narcosis, in order to produce ascites. The effect of obeticholic acid on bacterial translocation has yet to be completed.</p>

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<author>Kathleen Guo Yan</author>


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<title>Estimated Impact Of Widespread Cancer Screening: Insights From Three Decades Of Population-Level Data</title>
<link>http://elischolar.library.yale.edu/ymtdl/2185</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2185</guid>
<pubDate>Thu, 06 Jul 2017 09:40:03 PDT</pubDate>
<description>
	<![CDATA[
	<p>ESTIMATED IMPACT OF WIDESPREAD CANCER SCREENING: INSIGHTS FROM THREE DECADES OF POPULATION-LEVEL DATA</p>
<p>Daniel X. Yang and James B. Yu, Department of Therapeutic Radiology, Yale School of Medicine, New Haven, CT</p>
<p>Effective cancer screening detects cancer at an earlier and more curable stage, and thus reduces incident late-stage disease. However, in recent years, there has been sustained controversy over the net benefit of cancer screening due to concerns of overdiagnosis and overtreatment. Therefore, we sought to demonstrate the impact of cancer screening efforts at the population level, specifically examining incidence trends in colorectal, cervical, and prostate cancers. We sought to estimate the number of cervical and colorectal cancer cases prevented during an era of widespread screening, and to examine temporal associations between the 2012 United States Preventative Services Task Force (USPSTF) recommendation against PSA screening and emerging trends in metastatic prostate cancer. We hypothesize that screening efforts would be associated with characteristic shifts in cancer incidence: (1) Increased colonoscopy and sigmoidoscopy utilization would drive increased detection of left-sided colorectal cancers; (2) Widespread Pap smear use would be most effective in higher-risk populations; and (3) Decreased PSA screening would lead to increased late-stage disease. Colorectal, cervical, and prostate cancer incidence spanning over three decades from 1973 to 2013 were collected from the Surveillance, Epidemiology, and End Result (SEER) database. Screening utilization trends were collected from the National Cancer Institute Progress Reports, the National Health Interview Survey, and literature review. We demonstrate that widespread colorectal and cervical cancer screening were temporally associated with 236,000 to 550,000 cases of colorectal cancer and 105,000 to 492,000 cases of cervical cancer, respectively, over the past three decades from 1979 to 2009. Over this time period, the incidence of late-stage colorectal cancer decreased from 118 to 74 cases per 100,000 people (p < .001), and the incidence of late-stage cervical cancer decreased from 5.3 to 3.7 cases per 100,000 women (p < .001). Since the 2008 to 2012 pullback in PSA screening, metastatic prostate cancer incidence among United States men age 70 years or older increased from 54.2 per 100,000 men in 2011, to 56.6 per 100,000 men in 2012 and 59.5 per 100,000 men in 2013. Moreover, we address our hypotheses by: (1) Demonstrating a more prominent decrease in left-sided compared to right-sided colorectal cancer incidence; (2) Demonstrating a convergence of race-specific cervical cancer incidence over time; and (3) Characterizing the recent increase in metastatic prostate cancer incidence. Taken together, our studies document the successes of screening efforts as well as underscore the challenges of balancing the benefits of early detection against the risks of overdiagnosis and overtreatment.</p>

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</description>

<author>Daniel Yang</author>


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<title>Bcl-2 Inhibition For Leukemic Cutaneous T Cell Lymphoma: Targeted Molecular Screen, Biomarker Association, And Clinical Trial Design</title>
<link>http://elischolar.library.yale.edu/ymtdl/2184</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2184</guid>
<pubDate>Thu, 06 Jul 2017 09:40:01 PDT</pubDate>
<description>
	<![CDATA[
	<p>Cutaneous T cell lymphomas (CTCLs) are a group of primarily CD4+ skin-homing non-Hodgkin’s T cell lymphomas with a wide variety of clinical and histologic findings. Therapeutic options for advanced CTCL have expanded in recent decades beyond traditional chemotherapy with the advent of histone deacetylase inhibitors and biologic agents among other modalities; however, many patients do not respond to currently available treatments. Given the heterogeneity of genetic and epigenetic changes in CTCL, a broader range of agents may be necessary to control disease. Using recent advances in the understanding of CTCL genetics, we selected a range of small molecule inhibitors with genetically relevant mechanisms of action and developed an in vitro screen to test these drugs on malignant cells isolated from peripheral blood of patients, as well as CTCL cell lines. We tested drug effects on cell viability, apoptosis induction, and expression levels of relevant genes. This screen identified ABT-199 (venetoclax) as a potent inducer of caspase activity and cell death with viability EC50 for some patient cells ranging in the low nanomolar range for a 3-day assay. Bcl-2 expression, previously identified in non-CTCL cell lines as a biomarker predicting sensitivity to venetoclax, was explored; preliminary investigations suggest a similar relationship for patient cells and CTCL cell lines. Because of the extreme sensitivity demonstrated by some patients, we initiated design of a clinical trial for venetoclax in patients with leukemic CTCL. In parallel, to facilitate future selection of personalized therapy for CTCL, we also validated a FISH-based genetic diagnostic panel to detect common amplifications and deletions in sorted blood samples. This panel identified copy number alterations in recurrently affected genes at similar frequency to exome sequencing on a non-overlapping set of patients. With a new and convenient diagnostic modality, a personalized in vitro drug screen, and a biomarker-paired therapeutic option potentially on the horizon, we aim to bring genetically and functionally personalized therapy closer to its full potential in the management of CTCL.</p>

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<author>Jason G. Weed</author>


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<title>Uv-Induced Somatic Mutations Elicit A Functional T Cell Response In The Yummer1.7 Mouse Melanoma Model</title>
<link>http://elischolar.library.yale.edu/ymtdl/2183</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2183</guid>
<pubDate>Thu, 06 Jul 2017 09:39:57 PDT</pubDate>
<description>
	<![CDATA[
	<p>Human melanomas exhibit relatively high somatic mutation burden compared to other malignancies. These somatic mutations may produce neoantigens that are recognized by the immune system, leading to an anti-tumor response. By irradiating a parental mouse melanoma cell line carrying three driver mutations with UVB and expanding a single cell-derived clone, we generated a mutagenized model that exhibits high somatic mutation burden. When inoculated at low cell numbers in immunocompetent C57BL/6J mice, YUMMER1.7 (YUMM Exposed to Radiation) regresses after a brief period of growth. This regression phenotype is dependent on T cells as YUMMER1.7 tumors grow significantly faster in immunodeficient Rag1-/- mice and C57BL/6J mice depleted of CD4 and CD8 T cells. Interestingly, regression can be overcome by injecting higher cell numbers of YUMMER1.7, which results in tumors that grow without effective rejection. Mice that have previously rejected YUMMER1.7 tumors develop immunity against higher doses of YUMMER1.7 tumor challenge. Additionally, escaping YUMMER1.7 tumors are sensitive to anti-CTLA-4 and anti-PD-1 therapy, establishing a new model for the evaluation of anti-tumor immune responses and novel therapeutics.</p>

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<author>Jake Xiao Wang</author>


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<title>Training Healers, Making Martyrs?: Reexamining Resident Work Hours &amp; The Meaning Of A &quot;good Doctor&quot;</title>
<link>http://elischolar.library.yale.edu/ymtdl/2182</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2182</guid>
<pubDate>Thu, 06 Jul 2017 09:39:54 PDT</pubDate>
<description>
	<![CDATA[
	<p>In the 33 years since Libby Zion’s death in 1984, the medical profession has proved strongly resistant to shortening residency work hours. Why has this mindset persisted in the medical profession, despite public opinion skewing strongly in the opposite direction? What are the justifications used by the physician community to rationalize training residents this way, and what might be the broader implications of such a stance? In this thesis, I examine the above questions via a qualitative analysis of language used in the residency work hour debate in major medical journals, newspapers, and social media.</p>
<p>I describe what I term “American medical fundamentalism”: a belief system promoted by the medical profession, with “patient care above all else” as its central tenet and self-sacrifice as a means of achieving that goal. I assert that this latter concept is tied deeply to the identity of the medical profession, and that opposition to residency duty hour regulation is an external manifestation of a deeper existential crisis among physicians, as they confront a shifting landscape that threatens their previously elevated professional position and authority.</p>
<p>I also note that the language used to describe professionalism in medicine draws from traditionally “masculine” values, and that the arguments against stronger residency work hour restrictions uncomfortably parallel those used in the mid-twentieth century to advocate against training women physicians. Finally, in the context of growing awareness of an epidemic of burnout in the medical profession, I suggest that equating self-sacrifice with compassion and competence is not only inaccurate, but also dangerous, and necessitates a reexamination of the values underlying the medical profession’s conception of what it means to be a “good doctor.”</p>

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<author>Priscilla Wang</author>


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<title>Outcomes After Postoperative Radiation And The Association Between Chemoradiation And Facility Volume For Non-Small Cell Lung Cancer</title>
<link>http://elischolar.library.yale.edu/ymtdl/2181</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2181</guid>
<pubDate>Thu, 06 Jul 2017 09:39:51 PDT</pubDate>
<description>
	<![CDATA[
	<p>Purpose</p>
<p>To examine outcomes after postoperative radiation (PORT) and the impact of chemoradiation facility case volume in various populations of patients with non-small cell lung cancer (NSCLC).</p>
<p>Methods</p>
<p>We used patients within the National Cancer Data Base. In our analysis of outcomes after PORT, we examined two populations: 1)  incompletely-resected patients with pathologic stage N0-N2, overall American Joint Committee on Cancer stage II-III NSCLC who had undergone a lobectomy or pneumonectomy with positive surgical margins coded as receiving external beam PORT at 50-74 Gy or observation were included and  2) completely-resected patients with stage II-III N0-N1 margin-negative NSCLC who received a total radiotherapy dose within the range of 45.0-74.0 Gy given within the initial treatment course. To examine the impact of chemoradiation (CRT) facility case volume, we identified clinical stage III NSCLC patients diagnosed in 2004-2006 who were treated with definitive concurrent CRT to 59.4-74.0 Gy. High-volume facilities (HVF) were defined as those in the 90th percentile of annual CRT volume (≥12 cases/year). For all populations, multivariable logistic regression was used to determine factors associated with PORT receipt and independent predictors of receiving CRT at HVF. Cox proportional hazards regression was performed for multivariable analyses of overall survival for all populations.</p>
<p>Results</p>
<p>Among 3,395 included incompletely-resected patients, 1,207 (35.6%) received PORT. On multivariable analysis adjusting for demographic and clinicopathologic covariates, PORT (HR=0.80; 95%CI: 0.70-092) was associated with improved survival among margin-positive patients. Subset analysis by nodal stage showed PORT improved survival across all nodal stages.</p>
<p>We then identified 2,167 (6.7%) and 30,269  (93.3%) patients with completely-resected stage II or III N0-N1 NSCLC who were treated with and without PORT, respectively. Overall, completely-resected patients who received PORT had worse survival (HR=1.30; 95% CI 1.20-1.40) compared to those not receiving PORT.  This association was unchanged when limited to patients receiving modern treatment with 3-CRT or IMRT (HR=1.35; 95% CI: 1.10-1.65].</p>
<p>Among 10,072 included chemoradiation patients, 1,207 (12.0%) were treated at HVF. When controlling for demographic and clinical covariates including academic affiliation, treatment at HVF was independently associated with a significantly decreased risk of death (HR=0.93; 95% CI: 0.87-0.99; p=0.03). Propensity score matching showed that these findings were robust (HR=0.91; 95% CI: 0.84-0.99; p=0.04).</p>
<p>Conclusions</p>
<p>Our findings suggest that PORT is associated with improved overall survival in incompletely-resected Stage II-III N0-N2 NSCLC patients. However, we found no evidence of benefit from PORT for completely-resected N0-N1 NSCLC, regardless of dose or technique. We also found that treatment at high-volume facilities is associated with improved overall survival among stage III NSCLC patients receiving definitive concurrent CRT.  Thus, delivery of PORT in incompletely-resected early stage NSCLC and centralization of care to HVF for stage III NSCLC patients receiving definitive concurrent CRT may be beneficial strategies to optimize patient outcomes.</p>

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<author>Elyn H. Wang</author>


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<title>Development Of A Clinical Decision Rule For Subarachnoid Hemorrhage Headache In The Emergency Department</title>
<link>http://elischolar.library.yale.edu/ymtdl/2180</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2180</guid>
<pubDate>Thu, 06 Jul 2017 09:39:47 PDT</pubDate>
<description>
	<![CDATA[
	<p>Subarachnoid hemorrhage (SAH) is a neurological emergency associated with high morbidity and mortality.  It has a pre-hospital mortality rate of up to 50%, and can cause severe disability or death in 40-60% of patients.  A prompt diagnosis is crucial for timely work-up and intervention.  It is still frequently missed, especially in alert patients who present with an acute headache as the only chief complaint. Acute headache is the 5th leading reason for Emergency Department (ED) visits.  It accounts for about 3% of all ED visits in the US. Of these, ~2% will be secondary to aneurysmal SAH.</p>
<p>Some guidelines have emerged in recent years to help distinguish headache due to SAH from more benign causes. However, their generalizability is limited due to inclusion and exclusion criteria of individual studies, as well as unclear definitions of terminology used in criteria. This study aims to address these shortcomings by creating a generalizable clinical decision tool using a broader patient population, and providing clear definitions in a standardized questionnaire.</p>
<p>In this prospective observational study, 158 patients were interviewed using a standardized 15-item questionnaire.  Patients eligible were alert, able to communicate and answer the questionnaires in English, and had a headache presentation unrelated to trauma. Data was used to identify differential features of headache secondary to SAH, and these features were used to create a 5-item clinical decision tool.</p>
<p>A total of 583 patients were eligible.  Of those, 158 (27%) were enrolled, provided consent, and completed our questionnaire. Of these, 20 had SAH. After adjusting for confounders, patients with SAH were more likely to be ≥ 50 years old, experienced the “worst headache of [their] life,” had headache onset during exertion, had peak intensity instantaneously (<1 second), or had associated neck stiffness/pain. We proposed two clinical decision tools using these 5 features, which had a sensitivity of 100%, negative predictive value of 100%, and negative likelihood ratio of 0, comparable to existing rules.</p>
<p>Thus, our decision rules agree with existing ones and perform similarly, but they have clearer definition for terminology used and can be more generalizable after external validation.</p>

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<author>Linh H. Vu</author>


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<title>Transgender Youth: Evolving Treatment Paradigms</title>
<link>http://elischolar.library.yale.edu/ymtdl/2179</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2179</guid>
<pubDate>Thu, 06 Jul 2017 09:39:41 PDT</pubDate>
<description>
	<![CDATA[
	<p>The approach to treating youth with an incongruence between their gender assigned at birth and their gender identity (i.e. ‘transgender’ youth) has evolved dramatically since the beginning of the millennium. This work is divided into four parts: part one highlights key milestones in the evolution of the psychological and medical treatment of such youth.  Part two describes a series of projects intended to improve practicing child and adolescent psychiatrists’ care of these youth, and culminates with a statement written with and under review by the American Academy of Child & Adolescent Psychiatry, stating that therapeutics with the specific goal of promoting identification with a patient’s gender assigned at birth are unethical. Rather, practitioners should work with patients to explore the topics of gender identity and sexuality with no identity outcome as the desired goal. Part three describes an undergraduate medical education curriculum on the treatment of transgender youth that was created at Yale School of Medicine, intended to train a new generation of physicians competent in the care of this underserved population. This section culminates in a quantitative study that explores medical students’ knowledge of and ethical perspectives toward transgender pediatric patient care following the curricular intervention. It raises the question of whether didactic information alone is sufficient to develop cultural competency. Part four tells the story of a single transgender adolescent and will be published in the popular press to improve the public’s perception of and acceptance toward transgender youth.</p>

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<author>Jack Lewis Turban</author>


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<title>Surgical Delivery Of Mice Leads To Altered Adult Behavior Via Mitochondrial Adaptations</title>
<link>http://elischolar.library.yale.edu/ymtdl/2178</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2178</guid>
<pubDate>Thu, 06 Jul 2017 09:39:33 PDT</pubDate>
<description>
	<![CDATA[
	<p>We previously observed an association between brain mitochondrial mechanisms in mouse pups and mode of delivery. We also demonstrated that alterations in mitochondria can impact adult behavior. In this study we hypothesized that vaginal delivery induces mitochondrial uncoupling protein 2 (UCP-2) expression in-vivo when compared to surgical delivery and differences in expression alter neurodevelopment and adult behavior. We examined the hippocampus and layer III of the prefrontal cortex of vaginally and surgically delivered mice and evaluated gene expression of UCP-2 and mitochondrial and synaptic density of these areas using electron microscopy. Additionally, we performed open field, elevated plus, Y-maze and pre-pulse inhibition testing. We found that vaginal delivery is associated with increased expression of UCP-2. Surgically delivered animals do not experience this induction and demonstrate changes in mitochondrial mechanisms and synaptogenesis in the hippocampus and prefrontal cortex into adulthood. These alterations in ultrastructure are associated with phenotypes resembling animal models of psychiatric illness such as hyperlocomotion, decreased anxiety, and decreased auditory gating. However, by knocking out UCP-2, mode of delivery is unable to render these changes in ultrastructure or behavior. These results highlight how adult neuronal circuitry and behavior are impacted by delivery dependent mitochondrial adaptations.</p>

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<author>Melissa Brooke Taylor-Giorlando</author>


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<title>Engineered, Stem Cell-Derived Retinal Tissue For Treating Macular Degeneration In A Porcine Model</title>
<link>http://elischolar.library.yale.edu/ymtdl/2177</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2177</guid>
<pubDate>Thu, 06 Jul 2017 09:39:29 PDT</pubDate>
<description>
	<![CDATA[
	<p>Cell replacement therapy with induced pluripotent stem cells (iPSCs) is a promising treatment for diseases of retinal degeneration such as Age Related Macular Degeneration (AMD).  Despite progress in the ability to derive retinal progenitor cells from pluripotent cell in vitro, the ability to engineer a transplantable retinal tissue remains a challenge and the necessary large animal models in which to study implantation are lacking.</p>
<p>In this study we established the biocompatibility of iPSC derived retinal progenitor cells (RPCs) and human fetal retinal pigment epithelium (hfRPE) with a novel scaffold composed of gelatin, chondroitin sulfate, and hyaluronic acid (GCH).  iPSC-RPCs seeded onto GCH scaffolds either as clusters or after dissociation into single cells attached to, proliferated, and differentiated towards a neural retinal fate as evidenced by gene expression and immunohistochemistry.  Dissociation of RPC clusters before seeding, however, resulted in a significant decrease in expression of Recoverin, a key photoreceptor marker.</p>
<p>This study also established a model of outer retinal damage in pigs.  Argon laser induced outer retinal damage in the porcine visual streak and was detected on histology and multifocal electroretinography (mfERG) at time points immediately after and 10 days after injury.  This study laid the groundwork for a pilot study of subretinal GCH scaffold implantation in pigs.</p>

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<author>Laurel Tillinghast Tainsh</author>


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<title>Evaluation Of The Impact Of A Novel Bedside Ultrasound Curriculum On Undergraduate Medical Education</title>
<link>http://elischolar.library.yale.edu/ymtdl/2176</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2176</guid>
<pubDate>Thu, 06 Jul 2017 09:39:25 PDT</pubDate>
<description>
	<![CDATA[
	<p>Point-of-care ultrasound (POCUS) is being adopted by an increasing number of medical schools as a powerful teaching modality in which hands-on training in POCUS is integrated with or used as an adjunct to the existing undergraduate medical curriculum, particularly during the pre-clinical years. In 2013, the Yale School of Medicine (YSM) introduced a novel longitudinal POCUS curriculum as an optional elective offered to incoming first-year medical students who applied to participate in this elective in addition to the standard YSM curriculum; due to capacity limits, enrollment was by lottery. The goal of this study was to evaluate whether participation in the POCUS elective improved students’ performance in other areas of the YSM curriculum. To test this, we conducted a retrospective cohort study comparing mean scores on existing standardized assessments used in the YSM curriculum (including anatomy and physiology exams, clinical skills assessments, and board exams) between students in the POCUS elective and a randomly-selected control group of peer students who had applied for the POCUS elective but were not selected by lottery. For students in the POCUS cohort from the Classes of 2017 and 2018 (n=34), we observed a statistically-significant increase in mean physical exam score on a standardized clinical skills assessment compared to students in the control cohort (n=34) (mean score 89.2±1.0 vs 85.7±1.3, P=0.04); there was no difference in mean history-taking or communication skills scores. In a subgroup analysis of the Class of 2017, for students in the POCUS cohort (n=17) there was a trend towards increased mean score on the first anatomy exam (115.4 vs 108.4, P=0.07) and second physiology exam (67.9 vs 63.7, P=0.05) compared to controls; this increase approached but did not reach statistical significance. There was no difference in mean score on pathology exams or board exams. To further characterize the impact of the POCUS elective, we conducted a cross-sectional survey of students in the POCUS cohort; the results indicate strong support for POCUS education among enrolled students, and the score comparisons in our study suggest that implementation of a POCUS curriculum can objectively improve students’ physical exam skills and may improve their early understanding of anatomy and physiology on existing assessments.</p>

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</description>

<author>David Suwondo</author>


</item>




<item>
<title>A New Modality For Treating Cancer: Activating The Tumor Stroma</title>
<link>http://elischolar.library.yale.edu/ymtdl/2175</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2175</guid>
<pubDate>Thu, 06 Jul 2017 09:39:22 PDT</pubDate>
<description>
	<![CDATA[
	<p>Therapies such as chemotherapy and molecularly targeted therapy are the mainstays for cancer treatment but have their distinct drawbacks. The latest immunotherapies, while highly effective in certain tumors, fail to elicit a response in more than half of patients. New, alternate modalities to treating cancer are urgently needed. Most therapies target cancer cells, without regard to their surrounding tumor stroma, even though the tumor stroma is an active player in cancer initiation and invasion. Can tumor stroma be reprogrammed to inhibit cancer instead, as a novel modality to treat cancer? We use basal cell carcinoma (BCC) as a proof-of-concept model, as this follicular cancer distinctively lacks specialized fibroblasts (dermal condensates) in its tumor stroma that are normally present in hair follicles and associated benign tumors, and which are normally required for the differentiation of the epithelium into follicular fate. We hypothesize that inserting such hair-inductive fibroblasts into BCC stroma could cause differentiation and thereby suppression of cancer. First, by using lineage tracing and two-photon microscopy, we show for the first time that these fibroblasts in normal hair follicles are formed by the directional migration of Wnt-active upper dermal cells using actomyosin networks, with sonic hedgehog signaling being critical to their identity. Second, by co-transplanting these fibroblasts with BCC cells into immune-deficient mice, we find that BCC tumors are suppressed by engaging programs of differentiation. Tissue analysis show significantly decreased markers associated with malignancy and stem cell identity (Sox9, P-Cad, EdU) and increased markers of differentiation (keratin, keratohyalin granules, K10). Collectively, this study shows that activating the tumor stroma to promote normal epithelial differentiation in malignant cells may be a novel and effective modality to treat cancer.</p>

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</description>

<author>Thomas Yang Sun</author>


</item>




<item>
<title>Functional Recovery And Quality Of Life Of Intracerebral Hemorrhage (ich) Patients Over 12 Months</title>
<link>http://elischolar.library.yale.edu/ymtdl/2174</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2174</guid>
<pubDate>Thu, 06 Jul 2017 09:39:19 PDT</pubDate>
<description>
	<![CDATA[
	<p>Intracerebral hemorrhage (ICH) is associated with high mortality (40-50%) among stroke subtypes, however survivors may exhibit robust functional recovery. Research regarding ICH recovery has focused almost exclusively on motor domains at short time-points, three to six months. This prospective observational study was initiated to follow ICH recovery up to 12 months post-injury across motor and non-motor domains. Patients were enrolled and evaluated at discharge as well as three, six, and 12 months post-injury utilizing the modified rankin scale (mRS), Barthel Index (BI), Montrael Cognitive Assessment (MoCA), European Qualtiy of Life 5 Dimensions (EQ-5D), European Qualtiy of Life Visual Analogue Scale (EQ-VAS), and the Stroke Specific Quality of Life (SS-QoL).</p>
<p>As of October 2016, we have enrolled 173 ICH patients, with an average response rate (i.e. the ability to complete follow-up evaluations) of 85-89% across all follow-up time-points. Using either the mRS or BI, measures of motor disability, there was a significant improvement in scores (p values < 0.001) between discharge and three, six, and 12 months. The mRS scores failed to show a significant difference between follow-up time-points (i.e. three to six months, six to 12 months, etc.). However the BI showed significant improvement in scores between three and 12 months (p = 0.013), as well as between six and 12 months (p = 0.025). A subsequent analysis, comparing BI scores between three to 12 months, showed a significant relationship of time by age (p = 0.047; i.e. differences in improvement depending on the age of the patient), time by admission GCS (p = 0.010; i.e. differences in improvement depending on the admission GCS of the patient), time by ICH volume (p = 0.004; i.e. differences in improvement depending on the initial ICH volume of the patient), and time by location (p = 0.005; i.e. differences in improvement depending on the initial ICH location of the patient). Follow-up plots suggest patients with characteristically more disabling injury as traditionally measured through metrics like the ICH score (i.e. older patients, lower admission GCS, larger ICH volume, deeper location) showed the most improvement between three and 12 months. These results would suggest that ICH motor recovery will improve up to at least 12 months post-injury and patients with more debilitating injury will show improved recovery at the late-stage.</p>
<p>Across quality of life measures (i.e. EQ-5D, EQ-VAS, SS-QoL), patients showed the greatest recovery in motor domains (i.e. Mobility, Self-Care, Activities, Upper Extremities). Despite this improvement, patients self-reported health scores (EQ-VAS, a subjective 0 to 100 point score that patients use to describe their overall health) declined across time-points. There were additionally decreases in scores associated with the “Thinking” domain as well as increases in “Pain” symptoms. Since decreases in self-reported health score matched trends in the “Thinking” and “Pain” domains rather than the increases observed in motor-domains, patients may value non-motor domains when assessing their overall health compared to motor recovery. Finally, while there are improvements of cognitive impairment (measured via the MoCA, total score < 18) across time-points (discharge: 72%, three months: 65%, six months: 53%, 12 months: 48%), these results are more profound for deep compared to lobar ICH.</p>
<p>Preliminary analyses of the cohort enrolled thus far suggest ICH patients improve in motor recovery up to at least 12 months post-injury. However despite robust motor recovery, patients still exhibit high rates of cognitive impairment and impairment in quality of life. These results necessitate the need for long-term end-points in ICH interventional trials with further emphasis on non-motor domains. Continued enrollment and prospective evaluation of this cohort promises further insight into the recovery process.</p>

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</description>

<author>Anirudh Sreekrishnan</author>


</item>




<item>
<title>Use Of Medical Simulation In Treatment Of Obstetric Emergencies In Rural Indian Health Facilities</title>
<link>http://elischolar.library.yale.edu/ymtdl/2173</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2173</guid>
<pubDate>Thu, 06 Jul 2017 09:39:16 PDT</pubDate>
<description>
	<![CDATA[
	<p>Simulation has emerged as a highly effective tool in medical education and medical emergency preparation. The goals of this work were to (1) assess the implementation of a simulation program to enhance the diagnosis and management of obstetric and neonatal complications among nurses in Karnataka, India to improve overall quality of care in institutional births; and (2) develop guidelines for future simulation-based programs in keeping with updated best practices from the field of medical education. Observation of the ‘Skills and Drills’ postpartum hemorrhage emergency simulation in Koppal district took place on 13 January 2015. Comparison of project methodology to best practices in the current literature on simulation-based medical education using standardized patients was undertaken and an assessment of the Skills and Drills project was compiled, with recommendations for improvements to the program to better align its methodology with current best practices. The final report centers on a series of twenty-two recommendations modifying the implementation of the program across sixteen subject areas. These recommendations are intended to increase the effectiveness of the Skills and Drills protocol in teaching project participants the necessary knowledge, skills, and attitudes needed to ultimately improve the diagnosis and management of obstetric and neonatal complications among nurses in the northern districts of Karnataka state.</p>

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</description>

<author>Whitney Danielle Soble</author>


</item>




<item>
<title>Predicting Response To Anti-Pd-1 Immunotherapy In Metastatic Melanoma</title>
<link>http://elischolar.library.yale.edu/ymtdl/2172</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2172</guid>
<pubDate>Thu, 06 Jul 2017 09:39:13 PDT</pubDate>
<description>
	<![CDATA[
	<p>Predictive biomarkers for antibodies against programmed death 1 (PD-1) remain a major unmet need in metastatic melanoma. Thus, we evaluated three alternative tissue- and blood based markers biomarkers for response to anti-PD-1 therapy. First, pre-treatment melanoma samples were assayed for expression of: 1) IRF-1, a PD-L1 transcription factor, as a proxy for a tumor’s capacity to express PD-L1, and 2) an immune activation panel consisting of CD3, Ki67, and Granzyme B to distinguish immune-active and immune-quiescent tumors. Additionally, we conducted pilot studies to determine the feasibility of measuring soluble PD-L1 in the plasma of cancer patients.</p>
<p>For tissue-based assays, samples from melanoma patients that received nivolumab, pembrolizumab, or combination ipilimumab/nivolumab at Yale New Haven Hospital from May 2013 to March 2016 were collected. Expression of IRF-1 and PD-L1 in archival pre-treatment formalin-fixed, paraffin-embedded tumor samples were assessed by the AQUA method of quantitative immunofluorescence. Objective radiographic response (ORR) and progression-free survival (PFS) were assessed using modified RECIST v1.1 criteria. For pilot studies of sPD-L1, plasma from 62 patients with non-small cell lung cancer and 10 cancer-free controls were accessed from pre-existing de-identified tissue banks at Yale School of Medicine.</p>
<p>Nuclear IRF-1 expression was higher in patients with partial or complete response (PR/CR) than in patients with stable or progressive disease (SD/PD) (p = 0.044).  There was an insignificant trend toward higher PD-L1 expression in patients with PR/CR (p = 0.085). PFS was higher in the IRF-1-high group than the IRF-1-low group (p = 0.017), while PD-L1 expression had no effect on PFS (p = 0.83).  In a subset analysis, a strong association between IRF-1 and PFS is seen in patients treated with combination ipilimumab and nivolumab (p = 0.0051).  Higher CD3 infiltrates were more likely to be associated with PR/CR (p = 0.0067) and with improved PFS (p = 0.017). Conversely, higher expression of Granzyme B within CD3+ cells was associated with SD/PD (p = 0.023) and a trend toward inferior PFS (p = 0.066). Soluble PD-L1 in human plasma was detected by ELISA, and was elevated in NSCLC cases compared to controls (p < 0.0001).</p>
<p>As a measure of PD-L1 expression capability, IRF-1 expression may be a more valuable predictive biomarker for anti-PD-1 therapy than PD-L1 itself. Additionally, patients with quiescent immune infiltrates may benefit more from anti-PD-1 therapy than those with immune-active tumors. The viability of plasma-based predictive biomarkers for immunotherapies warrants additional investigation.</p>

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</description>

<author>James William Smithy</author>


</item>




<item>
<title>Differentiation Control In Tissue-Engineered Vascular Grafts With Oxygen &amp; Small Molecule Inhibitors</title>
<link>http://elischolar.library.yale.edu/ymtdl/2171</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2171</guid>
<pubDate>Thu, 06 Jul 2017 09:39:09 PDT</pubDate>
<description>
	<![CDATA[
	<p>Tissue-engineered vascular grafts (TEVGs) have the potential to provide life-saving arterial replacements to patients requiring vascular bypass, hemodialysis access, and pediatric coronary surgery. Recent years have seen impressive strides towards widespread clinical use, but significant work still remains in optimizing cell source and graft growth, including the suppression of unwanted calcification during culture.</p>
<p>In this study, I examine oxygen concentration and two small-molecule bone morphogenic protein (BMP) inhibitors, DMH-1 and LDN193189, as potential avenues of increased control over mesenchymal stem cell (MSC) differentiation of into vascular smooth muscle cells (SMCs). Applying BMP-inhibitor concentrations from 0.01 to 10 µM at oxygen tensions of 2 & 20% over two weeks of growth, I use reverse transcriptase quantitative polymerase chain reaction (RT-qPCR) to evaluate resultant expression levels of smooth muscle (SM22-α), bone (OCN), and cartilage (Col2a) marker genes. Via multiple linear regression, I demonstrate that low oxygen growth causes a statistically significant SM22-α downregulation (∆∆Cq = 1.77 ± 0.22, mean ± standard error, p <0.0%) coupled with increased Col2a (∆∆Cq = -2.85 ± 0.73, p =0.1%) and type-I collagen expression (∆∆Cq = -1.75 ± 0.65, p = 1.2%), suggesting that physiological oxygen tensions increase the incidence of chondrogenic differentiation. In contrast, LDN193189 increases SM22-α expression (∆∆Cq = -0.78 ± 0.27 per µM, p =0.8%) and reduces Col2a expression (∆∆Cq = -2.17 ± 0.89, p =2.2%), seeming to usefully suppress chondrogenesis.</p>
<p>Additionally, I evaluate the effects of pulsatile vessel growth conditions on an attractive new cell source: MSCs derived from induced pluripotent stem cells (iPSCs). Using PicoGreen and modified Bradford assays, I demonstrate that pulsatile growth conditions significantly increase dry weights of double-stranded DNA (dsDNA) from 0.0780 ± 0.002% to 0.1414 ± 0.008% (mean ± standard error, p = 0.015%) and collagen from 25 ± 2% to 46 ± 2% (p = 2.3%), approaching a sample of native aorta at 55% collagen.</p>
<p>Overall, results suggest normoxic growth conditions remain superior for SMC differentiation, but that the BMP-inhibitor LDN193189 may have a future role in suppressing cartilage production during TEVG growth. Furthermore, iPSC-derived MSCs demonstrate similar responses to traditional bone marrow MSCs, and may well represent an attractive cell source in future TEVG production.</p>

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</description>

<author>Joshua Morgan Arthur Siewert</author>


</item>




<item>
<title>Elucidating The Role Of Enterochromaffin Cells As Specialized Epithelial Sensors In Allergic Inflammation</title>
<link>http://elischolar.library.yale.edu/ymtdl/2170</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2170</guid>
<pubDate>Thu, 06 Jul 2017 09:39:06 PDT</pubDate>
<description>
	<![CDATA[
	<p>The aim of this project was to investigate the role of specialized epithelial sensors in allergic inflammation. We hypothesize that enterochromaffin cells play a pivotal role in the sensing of gut allergens, the induction of an inflammatory response to food allergens, and the execution of avoidance behaviors. Purported enterochromaffin cell line BON cells were grown and characterized by qPCR. BON cells were stimulated with ionomycin to induce degranulation, visualized by immunofluorescent microscopy, and analyzed by flow cytometry. For a model of type 2 inflammation, mice were infected with Nippostrongylus brasiliensis or sensitized to ovalbumin. Gut tissue from infected/sensitized and control mice was examined by immunofluorescent microscopy and intestinal epithelial cells were isolated and analyzed by flow cytometry. BON cells were found to be a heterogeneous population of cells that contain serotonin and chromogranin A. Candidate enterochromaffin cells in the intestine of mice could be identified by immunofluorescence and flow cytometry using indirect immunostaining for CD45+ 5-HT+ EpCAM+ and CD45+ CgA+ EpCAM+ cells. No gross change in enterochromaffin cell number was observed after infection with Nippostrongylus brasiliensis. Multiple protocols were compared to determine optimal study conditions. This work provides improved methods and insights into potential directions for further study.</p>

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</description>

<author>Jacob David Siegel</author>


</item>




<item>
<title>Prioritizing Primary Prevention Strategies For Cardiovascular Disease At The Clinic Population Level</title>
<link>http://elischolar.library.yale.edu/ymtdl/2169</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2169</guid>
<pubDate>Thu, 06 Jul 2017 09:39:02 PDT</pubDate>
<description>
	<![CDATA[
	<p>Cardiovascular Disease remains the number one cause of mortality in the United States with atherosclerotic cardiovascular disease (ASCVD) being a major component. Lifestyle interventions remain the first line treatment for the prevention of ASCVD, and clinic- based interventions effectively improve rates of healthy lifestyle choices. However, these programs require additional resources and there is currently no guidance for clinic directors to understand what lifestyle intervention(s) have the highest value for their unique population. We propose a novel application of the 10-year ASCVD risk calculator to a clinic patient cohort, thereby acting as a tool for providers and administrators to develop lifestyle intervention programs that will have the greatest risk reduction for their clinic population.</p>
<p>We first defined the ASCVD 10-year risk for patient cohorts from four different primary care clinics in New Haven, CT by normalizing and aggregating individual patient 10- year ASCVD risk scores. We then calculated changes to this normalized aggregate risk by modeling the effects of evidence-based interventions found in Cochrane Reviews of different efficacy to each of four modifiable risk factors used in the 10-year ASCVD risk calculator. The four different modifiable risk factors include systolic blood pressure, total cholesterol, HDL cholesterol and smoking status. A resulting change in each cohort’s normalized aggregate risk was calculated.</p>
<p>The clinic cohorts had different levels of modeled risk reduction from the same interventions. The magnitude of reduction was dependent on baseline normalized aggregate risk and prevalence of risk factor(s) targeted in the interventions. The three clinics where the baseline normalized aggregate risk was above 100 events per 1,000, patients had a greater risk reduction from an organizational intervention aimed at improving the quality of treatment for hypertensive patients compared to all other evidence-based interventions found in Cochrane Reviews. In the clinic that had a lower baseline normalized aggregate risk, the highest yield intervention was dietary advice by providers. Our data demonstrate that the highest yield lifestyle intervention for any clinic may vary depending on the makeup of the populations and its risk factors.</p>
<p>The tool created in this study can be used by clinic providers and administrators to estimate the effects of various interventions on the ASCVD risk of their clinic cohort. The models generated by this tool can be used to guide strategy and prioritize clinic resources based on the extrapolated effects of evidence based interventions to specific clinic populations. Furthermore, it may also guide interventions planned to address needs identified by community health assessments. Because the tool predicts outcomes for specific patient populations it has the potential to foster the application of evidence-based practices to population health management.</p>

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</description>

<author>Giulio Cesare Rottaro Castejon</author>


</item>




<item>
<title>The Management Of Operable Lung Cancer In The National Cancer Database</title>
<link>http://elischolar.library.yale.edu/ymtdl/2168</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2168</guid>
<pubDate>Thu, 06 Jul 2017 09:38:58 PDT</pubDate>
<description>
	<![CDATA[
	<p>THE MANAGEMENT OF OPERABLE LUNG CANCER IN THE NATIONAL CANCER DATABASE Joshua E. Rosen, Michelle C. Salazar, Brian N. Arnold, Daniel C. Thomas, Justin D. Blasberg, Anthony W. Kim, Frank C. Detterbeck, and Daniel J. Boffa. Section of Thoracic Surgery, Department of Surgery, Yale University School of Medicine, New Haven, CT.</p>
<p>This thesis describes four studies that examine various aspects of the care of non-small cell lung cancer (NSCLC) patients in the United States. All studies were performed utilizing data from the National Cancer Database (NCDB), a clinical tumor registry that captures approximately 70% of all incident cancer cases in the United States.</p>
<p>The first study characterizes the natural history of operable NSCLC, with the hypothesis that it would be superior to non-operable NSCLC. Cohorts of operable and non-operable patients were selected from the NCDB and their overall survival was analyzed using the Kaplan-Meier (KM) technique. The 5-year overall survival for untreated operable NSCLC was 10.1%, 7.3% and 4.9% for stage I, II, and IIIA disease respectively. Untreated operable NSCLC was associated with a superior survival compared to untreated non-operable NSCLC at all stages of disease (P<0.001). The natural history of operable NSCLC is still poor, but varies with stage and is superior to that of non-operable NSCLC.</p>
<p>The second study compared the efficacy of surgical lobectomy and stereotactic body radiotherapy (SBRT) for the treatment of stage I NSCLC in healthy patients, with the hypothesis that lobectomy would be associated with superior survival. Cohorts of “healthy” (i.e. no comorbidities, not considered medically inoperable) patients were selected from the NCDB and propensity-matched cohorts of SBRT and lobectomy patients were compared using the KM technique. Lobectomy was associated with a superior 5-year survival compared to SBRT (59% vs 29%, P < 0.001). These findings suggest that lobectomy leads to superior long-term survival over SBRT in patients with clinical stage I NSCLC whose health does not prohibit the use of surgery.</p>
<p>The third study examined risk factors for perioperative mortality and extended length of stay (eLOS, > 14 days) in NSCLC patients undergoing surgery. The NCDB was queried for NSCLC patients undergoing surgery, and those that experienced an adverse outcome were compared to those who did not using multivariable logistic regression modeling. Overall 30-day mortality rate was 3.4% and varied by surgical procedure. The frequency of adverse events after lung cancer surgery in the NCDB was found to be in line with that of other large databases.</p>
<p>The final study examines the relationship between facility discharge practices and readmission rates following lobectomy for NSCLC with the hypothesis that facilities that have a systematic practice of rapid discharge will have higher readmission rates. Facilities discharge practices were characterized by their median LOS relative to the median LOS for all patients in the same diagnosis year. Risk-standardized readmission rates (RSRRs) were calculated for each level of facility discharge practices (from rapid to slow) and it was found that facilities with a practice of rapid discharge had a significantly lower mean RSRR than those with slower discharge practices. In conclusion, it is possible for facilities to develop a practice of early discharge after lobectomy without increasing their rate of readmission.</p>

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</description>

<author>Joshua Eli Rosen</author>


</item>




<item>
<title>The Evolution Of Restraint In American Psychiatry</title>
<link>http://elischolar.library.yale.edu/ymtdl/2167</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2167</guid>
<pubDate>Thu, 06 Jul 2017 09:38:54 PDT</pubDate>
<description>
	<![CDATA[
	<p>History/Social Science:</p>
<p>The Evolution of Restraint in American Psychiatry</p>
<p>Author: Danilo Rojas-Velasquez</p>
<p>In psychiatry, restraint generally refers to direct methods such as mechanical restraints or the use of drugs. Despite psychiatrists’ best efforts to utilize restraint judiciously, many patients still view it as the field’s defining feature, especially on inpatient units with involuntary commitment, medications against will, and locked doors. This essay is an attempt to understand the pervasiveness of restraint in psychiatry. It uses changes in the practices of restraint to examine the growth of the field over time. To accomplish this, the paper identifies three distinct regimes of restraint: the moral treatment of the 1800s, associated with the asylum; the somatic treatment of the early 1900s, associated with psychosurgery; and the pharmaceutical treatment of the later 1900s, associated with pills. The essay analyzes primary sources drawn from the scientific and psychiatric literature of each period, in addition to marketing materials. It also examines the work of prominent figures associated with each regime, including Samuel Tuke, Clifford Beers, and Walter Freeman. The paper engages the work of a range of historians of psychiatry, including David Rothman, Michel Foucalt, Andrew Scull, and David Herzberg. Two major conclusions are drawn. First, restraint evolved from the physical form seen in madhouses to self-restraint first seen in the early asylum. The role of the psychiatrist followed this evolution, as the psychiatrist increasingly became the figure to help patients achieve self-restraint. Secondly, because psychiatrists became the judges of how much self-restraint is acceptable, they have come into conflict with society during periods of change, which contributes to the stigma and backlash against psychiatric practice.</p>

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</description>

<author>Danilo Alejandro Rojas-Velasquez</author>


</item>




<item>
<title>Health Professional Students As Providers Of Behavioral Health Services To Uninsured Immigrants</title>
<link>http://elischolar.library.yale.edu/ymtdl/2166</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2166</guid>
<pubDate>Thu, 06 Jul 2017 09:38:49 PDT</pubDate>
<description>
	<![CDATA[
	<p>Using the principles of lay counseling, health professional students were trained to deliver psychosocial educational interventions and administer substance use screenings to uninsured monolingual Spanish-speaking Latino immigrants with symptomatic depression and/or substance use disorders. Changes in depressive symptoms were assessed with the PHQ-9. Twenty-five patients enrolled in the lay counselor program for depression. PHQ-9 data were available from the 15 individuals who completed the program, among whom the mean baseline score was 11.7 (SD = 6.2) and mean final score was 4.6 (SD = 4.2) (p <0.001). Participants were screened for substance use with the Screening, Brief Intervention and Referral to Treatment (SBIRT), an evidence-based protocol. A total of 199 patients were screened for multiple substances. Previously uncharacterized patterns of substance use were observed in this population. The educational component of the program for depression was evaluated by administering a survey to the student volunteers.  Following their participation in the program, students exhibited increased interest in both underserved populations and the mental health field. Lay counselor approaches commonly applied in low-resource settings may help to address mental health disparities, ensure substance use preventive care for first generation Latino immigrants, and recruit students into the psychiatric profession.</p>

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</description>

<author>Juan Gabriel Rodriguez Guzman</author>


</item>




<item>
<title>An Idh1 Mutation Prevalent In Glioma Confers Deficient Dna Repair And Sensitivity To Parp Inhibition</title>
<link>http://elischolar.library.yale.edu/ymtdl/2165</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2165</guid>
<pubDate>Thu, 06 Jul 2017 09:38:46 PDT</pubDate>
<description>
	<![CDATA[
	<p>High-grade gliomas (HGGs) are devastating malignancies of the central nervous system, and few treatment options are available for these tumors. In the most malignant form of the disease, glioblastoma multiforme (GBM), over 90% of patients will succumb to their tumor within 5 years after standard of care treatment, consisting of surgery, radiation therapy, and temozolomide chemotherapy. It is now clear that gliomas are molecularly heterogeneous entities, with mutations in tumor suppressors and oncogenes defining many distinct sub-types with important therapy implications. However, almost all HGGs are treated with a limited array of initial therapies, regardless of these molecular differences. Isocitrate dehydrogenase 1 (IDH1), a gene recently found to be mutated in many gliomas, is involved in the conversion of isocitrate to 2-oxoglutarate in cells. The IDH1 R132H mutant enzyme converts 2-oxoglutarate to the oncometabolite (R)-2- hydroxyglutarate (2HG), which leads to profound metabolic alterations in tumor cells. In addition, recent studies indicate that mutations in IDH1 may also induce altered DSB repair, differential sensitivities to chemo-radiotherapy, and substantial changes in chromatin modifications. Here, we present the creation of a novel HeLa cell line harboring an engineered IDH1 R132H mutation at the endogenous gene locus using CRISPR-Cas9 gene editing. We validated the cell line using a variety of biochemical and</p>
<p>functional assays. In particular, we demonstrated that our mutant cell clones secrete high levels of 2HG, and confirmed that the levels of this oncometabolite can be suppressed with small molecule inhibitors of mutant IDH1. We then performed a focused drug screen using select small molecule inhibitors of DNA repair, leveraging our observation that IDH1 mutant cells are more sensitive to radiation. We report that IDH1-R132h confers increased sensitivity to BMN-673, a PARP inhibitor known to preferentially kill cells with decreased homologous recombination (HR) functionality. We also demonstrate synergy between BMN-673 and the platinating agent, cisplatin, that is enriched by the IDH1-R132H mutation. Finally, preliminary gene expression analysis does not identify any significant decreased expression in a panel of DNA repair-related genes, suggesting that some alternative mechanism may be responsible for the drug sensitivity effect we see. Taken together, these findings suggest that IDH1 mutant tumors may be sensitive to PARP inhibition, representing a new treatment strategy for a devastating disease.</p>

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</description>

<author>Nathaniel David Robinson</author>


</item>




<item>
<title>Longitudinal Assessment Of Blood Brain Barrier Disruption In Primary Hiv Infection And Effect Of Cart Therapy</title>
<link>http://elischolar.library.yale.edu/ymtdl/2164</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2164</guid>
<pubDate>Thu, 06 Jul 2017 09:38:42 PDT</pubDate>
<description>
	<![CDATA[
	<p>Abnormal blood brain barrier (BBB) permeability has been implicated in the neuropathogenesis of chronic HIV infection. As neurocognitive impairment can persist despite effective combination antiretroviral therapy (cART), it is possible that irreversible central nervous system (CNS) processes are initiated in early infection, before cART is typically initiated. We analyzed the natural history of BBB permeability in primary HIV infection (PHI), and the effects of cART initiated during this period. CSF:Serum albumin quotient (QAlb), a marker of BBB permeability, was measured in longitudinal observational studies of PHI. We analyzed trajectories of QAlb pre- and post-cART using mixed-effects models, and associations between QAlb and CSF neurofilament light chain (NFL), N-acetylaspartate:creatinine (NAA:Cr, a magnetic resonance spectroscopy biomarker for neuronal integrity), and neuropsychological testing. Age-adjusted QAlb was elevated in PHI vs. controls at baseline (n=106, median 91 days post infection, dpi; n=64; p=0.02). Before cART, QAlb increased over time in 84 participants with normal baseline QAlb (p=0.006), and decreased in 22 with high baseline QAlb (p=0.011). QAlb correlated at baseline and longitudinally with NFL (r=0.497, p<0.001; r=0.555, p<0.001) and NAA:Cr in parietal grey matter (r=-0.352, p=0.015, r=-0.387, p=0.008), but not neuropsychological performance. QAlb did not change after a median 398 days of cART initiated at 225 dpi (p=0.174). QAlb rises during early HIV, associates with neuronal injury, and does not significantly improve over a year of treatment. HIV BBB-associated neuropathogenesis may be initiated in early infection.</p>

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</description>

<author>Elham Rahimy</author>


</item>




<item>
<title>Immune Checkpoint Therapy And Stereotactic Radiosurgery For Melanoma Brain Metastases</title>
<link>http://elischolar.library.yale.edu/ymtdl/2163</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2163</guid>
<pubDate>Thu, 06 Jul 2017 09:38:39 PDT</pubDate>
<description>
	<![CDATA[
	<p>IMMUNE CHECKPOINT THERAPY AND STEREOTACTIC RADIOSURGERY FOR MELANOMA BRAIN METASTASES. Jack M. Qian, James B. Yu, Harriet M. Kluger, and Veronica L. Chiang. Departments of Therapeutic Radiology, Medicine, and Neurosurgery, Yale University, School of Medicine, New Haven, CT.</p>
<p>Growing evidence suggests that immunotherapy and radiation therapy can be synergistic in the treatment of cancer. We sought to determine the effect of the relative timing and type of immune checkpoint therapy on the response of melanoma brain metastases to treatment with stereotactic radiosurgery (SRS) by reviewing our institutional experience.</p>
<p>Patients with melanoma brain metastases were identified from an institutional database of patients treated with Gamma Knife SRS. SRS treatment plans, follow-up imaging, and details of immunotherapy treatment were reviewed. Immunotherapy and radiosurgery treatment to any single lesion was considered concurrent if SRS was administered within four weeks of immunotherapy. The primary outcome of interest was lesional response, as measured by changes in individual lesion volume during follow-up. The impact of timing and type of immunotherapy on lesional response was determined using the Wilcoxon rank sum test to compare median percent lesion volume change at 1.5 months, 3 months, and 6 months after SRS treatment, with significance determined by p=0.0167, per the Bonferroni correction for multiple comparisons. Secondary endpoints included lesional regrowth, distant brain recurrence, and overall survival.</p>
<p>75 melanoma patients with 566 brain metastases treated between 2007 and 2015 were included in this study. Concurrent use of immunotherapy and SRS resulted in significantly greater median percent reduction in lesion volume at 1.5 months (-63.1% vs -43.2%, p<0.0001), 3 months (-83.0% vs -52.8%, p<0.0001), and 6 months (-94.9% vs -66.2%, p<0.0001) compared to non-concurrent therapy. Median percent reduction in lesion volume was also significantly greater for anti-PD-1 than for anti-CTLA-4 at 1.5 months (-71.1% vs -48.2%, p<0.0001), 3 months (-89.3% vs -66.2%, p<0.0001), and 6 months (-95.1% vs -75.9%, p=0.0004). The median overall survival for the entire cohort was 18.5 months.</p>
<p>Our study shows that administration of immunotherapy within four weeks of SRS results in improved lesional response of melanoma brain metastases compared to treatment separated by greater than four weeks. Anti-PD-1 therapy also results in greater lesional response than anti-CTLA-4 after SRS.</p>

	]]>
</description>

<author>Jack Mu Qian</author>


</item>




<item>
<title>Differences In Infant Care Practices And Smoking Among Hispanic Mothers Living In The United States</title>
<link>http://elischolar.library.yale.edu/ymtdl/2162</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2162</guid>
<pubDate>Thu, 06 Jul 2017 09:38:36 PDT</pubDate>
<description>
	<![CDATA[
	<p>DIFFERENCES IN INFANT CARE PRACTICES AND SMOKING AMONG HISPANIC MOTHERS LIVING IN THE UNITED STATES</p>
<p>Lauren E Provini, Michael J Corwin, Nicole L Geller, Timothy C Heeren, Rachel Y Moon, Denis V Rybin, Carrie K Shapiro-Mendoza, and Eve R Colson. Section of General Pediatrics, Department of Pediatrics, Yale University, School of Medicine, New Haven, CT.</p>
<p>Given that data assessing the heterogeneity of infant care practices among Hispanics are lacking, the objective of this study was to assess the association between maternal birth country and adherence to the American Academy of Pediatrics (AAP) safe sleep recommendations in a national sample of Hispanic mothers. We used a stratified, 2-stage, clustered design to obtain a nationally representative sample of mothers from 32 U.S. intrapartum hospitals. 907 completed follow-up surveys (administered 2-6 months postpartum) were received from mothers who self-identified as Hispanic/Latina, forming our sample, which we divided into 4 subpopulations by birth country (U.S., Mexico, Central/South America, and Caribbean). Prevalence estimates and aORs were determined for infant sleep position, location, breastfeeding, and maternal smoking. When compared with U.S.-born mothers, we found that: mothers born in the Caribbean (aOR 4.56, 95% CI 1.07-19.5) and Central/South America (aOR 2.68, 95% CI 1.38-5.22) were more likely to room share without bed sharing. Caribbean-born mothers were less likely to place infants to sleep supine (aOR 0.41, 95% CI 0.22-0.77). Mothers born in Mexico (aOR 1.67, 95% CI 1.03-2.72) and Central/South America (aOR 2.57, 95% CI 1.09-6.07) were more likely to exclusively breastfeed; Caribbean-born mothers (aOR 0.13, 95% CI 0.03-0.63) were less likely to do so. Foreign-born mothers were significantly less likely to smoke before and during pregnancy. In conclusion, among U.S. Hispanics, adherence to AAP safe sleep recommendations varies widely by maternal birth country. These data illustrate the importance of examining behavioral heterogeneity among ethnic groups and have potential relevance for developing targeted interventions for safe infant sleep.</p>

	]]>
</description>

<author>Lauren Elaine Provini</author>


</item>




<item>
<title>The Md/mba Effect: A Study Of How Residency Directors Perceive Applicants With An Mba, A Ten-Year Comparison Study From 2006 To 2016</title>
<link>http://elischolar.library.yale.edu/ymtdl/2161</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2161</guid>
<pubDate>Thu, 06 Jul 2017 09:38:32 PDT</pubDate>
<description>
	<![CDATA[
	<p>Background: Over the past decade, the landscape of healthcare has changed</p>
<p>dramatically, demanding the close integration of business and management with the</p>
<p>delivery of clinical care. In response, there has been a continuation of the trend towards</p>
<p>additional training for physicians through an MBA program that has been seen over the</p>
<p>last thirty years. However, some medical students have encountered some negative</p>
<p>perceptions voiced by senior physicians about MD/MBA training. As most MD/MBA</p>
<p>joint-degree candidates consider clinical careers, it is vital to understand the views of</p>
<p>residency program directors who hold the gates to graduate medical education.</p>
<p>Purpose: Therefore in this paper, we will investigate the following hypotheses:</p>
<p>Completing an MBA as a medical student will be perceived positively by residency</p>
<p>directors, and the global opinion of MD/MBA candidates has changed over the last</p>
<p>decade.</p>
<p>Methods: An electronic survey was sent to residency directors in most major</p>
<p>specialties across the United States to ascertain their opinions of MD/MBA residency</p>
<p>candidates. A Likert score was tabulated corresponding to the level of MBA-favorability</p>
<p>of each program. Statistical correlations were performed based on medical specialty,</p>
<p>demographics, geographical region, the experience of the program director with an MBA</p>
<p>curriculum, faculty with an MBA, or residents with an MBA. Data were compared with</p>
<p>a similar survey by Lyssy et al performed in 2006.</p>
<p>Results: 578 residency program directors responded to our survey, a response rate</p>
<p>of 22.2%. No statistically significant difference was found in the calculated Likert score</p>
<p>of MBA candidate favorability across the medical specialties. A statistically significant</p>
<p>difference in the proportion of program directors with interactions with faculty and</p>
<p>residents with an MBA was found among the medical specialties; however, no</p>
<p>statistically significant difference in the proportion of program directors who personally</p>
<p>hold an MBA was found. Program directors who had direct experience working with</p>
<p>residents with an MBA reported higher Likert positivity scores compared to those who</p>
<p>did not. Additionally, departments with a higher number of faculty with an MBA were</p>
<p>positively correlated with a greater number of residents with an MBA in that program.</p>
<p>Residency program director age was negatively correlated with the Likert MBA</p>
<p>candidate favorability score. Compared to the 2006 dataset, there were minimal changes</p>
<p>in the Likert-type question scores in 2016.</p>
<p>Conclusions: Residency directors across multiple specialties positivity regard</p>
<p>MD/MBA candidates and the candidates’ training for their residency programs.</p>
<p>Moreover, this regard has remained generally stable over the past decade.</p>

	]]>
</description>

<author>Jay Pravin Patel</author>


</item>




<item>
<title>Investigating Hereditary Breast And Ovarian Cancer (hboc) Syndrome In Trinidad And Tobago</title>
<link>http://elischolar.library.yale.edu/ymtdl/2160</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2160</guid>
<pubDate>Thu, 06 Jul 2017 09:38:28 PDT</pubDate>
<description>
	<![CDATA[
	<p>Trinidad and Tobago (T&T) is a Caribbean island with a population of approximately 1.3 million. T&T has one of the highest breast cancer mortality rates in the region.  Notably, a large proportion of breast cancer cases in T&T appear to occur at a young age, as nearly 36% of breast cancers are diagnosed under the age of 50. It is known that a younger age at diagnosis can be associated with Hereditary Breast and Ovarian Cancer syndrome (HBOC). However, the prevalence of HBOC mutations remains unknown in T&T, as accessible health services for genetic counseling and testing in T&T currently are limited.  As such, our study aimed to determine the prevalence and spectrum of HBOC mutations among women with breast cancer in T&T who met National Comprehensive Cancer Network (NCCN) criteria for evaluation for HBOC syndrome to determine the need to include genetic counseling and testing in local oncology management in T&T.</p>
<p>At the main oncology unit in T&T, female breast cancer patients who met the NCCN criteria were recruited for this study. We conducted interviews inquiring about their personal breast cancer diagnosis, as well as any relevant family history. This was followed by the collection of saliva samples using Oragene kits, which were then analyzed by Color Genomics Inc. for 30 genes associated with hereditary cancers. Finalized results were returned to patients by genetic counselors from Color Genomics.  In total, 58 patients who met NCCN guidelines were sequenced and results were returned. They showed that of 58 samples, 15 patients tested positive for deleterious HBOC germline mutations: 9 - BRCA1, 3 - BRCA2, 1 – CHEK2, 1- PALB2 and 1 – PTEN, with an overall prevalence rate of 25.8%. This prevalence rate is remarkable, given that HBOC mutations among U.S. women with breast cancer are found in only 5-10% of patients. These initial results clearly demonstrate the need to include genetic counseling and testing in the local oncology management in T&T, as the identification of HBOC mutations can influence treatment options, as well as help identify family members who are at high risk for cancer predisposition. Ultimately, this implementation could help alleviate the country’s high incidence and mortality rates with respect to breast cancer.</p>

	]]>
</description>

<author>Gerneiva Parkinson</author>


</item>




<item>
<title>Electronic Medical Records For Trauma Surveillance In South Africa: The Case Of Khayelitsha Hospital</title>
<link>http://elischolar.library.yale.edu/ymtdl/2159</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2159</guid>
<pubDate>Thu, 06 Jul 2017 09:38:24 PDT</pubDate>
<description>
	<![CDATA[
	<p>Electronic Medical Records (EMRs) have shown benefit for clinical, organizational, and societal outcomes(1). In South Africa, the desire for effective record keeping will continue to rise with increasing trauma and infectious disease rates. Recognizing this, the Western Cape government in 1999 signed a tender to rollout Clinicom EMR, an online storage system for paper records, to all hospitals within the province(2).</p>
<p>In 2012, Khayelitsha Hospital (KH) was opened with the Clinicom EMR installed. In 2013, KH received the ministerial award for clinical excellence as a result of the effective EMR rollout. Due to a high incidence of violence around Khayelitsha, and the need for effective trauma surveillance for efficient resource allocation, the authors sought to calculate the Emergency Center (EC) trauma rate for KH. Retrospective review of both paper charts and the Clinicom EMR from July 2012 to May 2013 was performed.</p>
<p>The Clinicom EMR yielded a mean monthly EC trauma visit of 280 patients, mean EC census of 3537 patients and a mean trauma rate of 8%. The latter was much lower than the nationwide estimate of 33%. For the month of July, 66 additional cases were found on the paper registry but not on the EMR. Furthermore for the months of January to May 2013, scanned copies of patient records were unavailable on the EMR online database.</p>
<p>The discrepancy between the paper records and the EMR suggest potential difficulties with the implementation of the Clinicom EMR that were overlooked by the award committee, and call into question the 8% trauma rate calculated. The results highlight the need for further evaluation of the functioning of the Clinicom EMR system to identify difficulties in implementation and correct them before the system is utilized in hospitals across South Africa.</p>

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</description>

<author>Emmanuel Chibuikem Ohuabunwa</author>


</item>




<item>
<title>The Application Of Small Molecule Inhibitors Of Ngr1 And Lpa1 Towards The Goal Of Neuroregeneration In The Central Nervous System</title>
<link>http://elischolar.library.yale.edu/ymtdl/2158</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2158</guid>
<pubDate>Thu, 06 Jul 2017 09:38:21 PDT</pubDate>
<description>
	<![CDATA[
	<p>Disorders affecting the CNS are significantly disabling and often carry a poor prognosis of functional recovery. Pharmacotherapies that promote functional improvement via neuroregeneration have proven to be an elusive goal. Factors intrinsic to the neuronal microenvironment, particularly myelin-associated proteins such as Nogo-A, MAG, and OMgp, have been shown to be important in inhibiting such regeneration through neuronal NgR1. Additionally, LPA signaling through LPA1 has also shown to be important in inhibiting neuroregeneration through mechanisms that are currently being researched.</p>
<p>It has been previously shown that application of a NgR1 decoy receptor (AA-NgR(310)ecto-Fc) increases sprouting below the site of the lesion in rats with spinal cord contusion injuries. Likewise, application of this same decoy receptor effectively disinhibited functional recovery as exemplified by the increase in percentage of weight-bearing rats treated with the decoy receptor. Noting the more ideal synthetic properties of a small molecule pharmaceutical, here we attempt to use a small molecule inhibitor of NgR1 to induce the in vitro regeneration of axons following scrape injury as well as in an in vivo model of mice with SCI. Additionally, noting the importance of LPA1 as shown through previous studies, we also attempt to utilize a small molecule inhibitor of LPA1 to promote axonal regeneration.</p>
<p>Our results show that inhibition of NgR1 with the small molecule inhibitor YU-NR-008 did not significantly improve axonal regeneration in vitro. Application of the NgR1 inhibitor YU-NR-008 alone showed a trend toward improved axonal regeneration, albeit insignificant (mean signal intensity for YU-NR-008 treated animals at 1.243 ± 0.128 vs. control 1.00 ± 0.00, p = 0.0787). Co-treatment with YU-NR-008 and Nogo-22 did not rescue Nogo-22-mediated inhibition of axonal regeneration (Nogo-22 0.771 ± 0.051 vs. Nogo-22 with YU-NR-008 at 0.801 ± 0.073). Additionally, functional recovery as measured by the Basso Mouse Scale (BMS) was not improved with the administration of YU-NR-008 following SCI for 2 or 4 weeks (D32 BMS scores were 4.643 ± 0.713 (SEM) for control vs. 3.550 ± 0.669 for animals treated with YU-NR-008 for 4 weeks). Likewise, administration of the LPA1 antagonist AM095 did not improve functional recovery following SCI (mean BMS at 54 days for AM095-treated animals was 3.182 ± 0.532 vs. 5.033 ± 0.448 for vehicle-treated animals). We conclude that the tested doses of YU-NR-008 and AM095 were ineffective in promoting recovery in a rodent model spinal cord injury. Additional studies will be needed to determine whether axonal growth was stimulated by these doses, or if drug doses failed to achieve the cellular target effect following spinal cord injury.</p>

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</description>

<author>Hiam Naiditch</author>


</item>




<item>
<title>Prevalence Of Celiac Disease And Anti-Tissue Transglutaminase (ttg) Antibodies In Children With Ibd</title>
<link>http://elischolar.library.yale.edu/ymtdl/2157</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2157</guid>
<pubDate>Thu, 06 Jul 2017 09:38:17 PDT</pubDate>
<description>
	<![CDATA[
	<p>Introduction</p>
<p>Celiac disease and inflammatory bowel disease (IBD) are immune mediated chronic gastrointestinal disorders that present with similar symptoms such as abdominal pain, diarrhea and growth failure. In adults, some studies have shown increased prevalence of celiac disease in patients with IBD while other studies have not. There is no published data looking at the prevalence of celiac disease in children with IBD. We aim to investigate the prevalence of celiac disease and anti-tissue transglutaminase (tTG) antibodies in children with IBD.</p>
<p>Methods</p>
<p>We performed a retrospective chart review of children with IBD followed routinely in our clinic over the last 4 years. These children were matched with a non-IBD control group of children presenting with gastrointestinal symptoms to GI clinic. All children were routinely screened for celiac disease with tTG-IgA and total IgA. Clinical, laboratory, and histological data were collected in all children. Abnormal tTG was defined as >30u/ml.</p>
<p>Results</p>
<p>The study population included 130 children with IBD and 258 in the control group. The mean age of children was 14.6 ± 3 years and 58% were males. The IBD group included 75 children with Crohn’s disease and 55 with ulcerative colitis. Abnormal tTG levels were found in 6 patients in the IBD group and 20 patients in the control group (4.6% vs. 7.8%, p = 0.24). To further evaluate the presence of celiac disease, tTG positive children were tested with endomysial autoantibodies (EMA) and duodenal histology, leading to celiac diagnosis in one patient with IBD and 12 patients in the control group. Celiac disease prevalence was lower among children with IBD compared with the control group (0.8% vs. 4.7%, p = 0.07). False positive rates were 3.9% and 3.3% for the IBD and the control groups, respectively.</p>
<p>Discussion</p>
<p>Children with IBD do not have higher prevalence of celiac disease compared to other children who present with gastrointestinal symptoms to a GI clinic. Prevalence of celiac disease in children with IBD (0.8%) is similar to that of reported prevalence (1%) in general population. Rates of false positive tTG antibodies are similar in children with IBD and the control group. Routine screening for celiac disease in children with IBD is not warranted.</p>

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</description>

<author>Farhan Murshed</author>


</item>




<item>
<title>Small Estimated Placental Volume Predicts Low Birthweight</title>
<link>http://elischolar.library.yale.edu/ymtdl/2156</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2156</guid>
<pubDate>Thu, 06 Jul 2017 09:38:13 PDT</pubDate>
<description>
	<![CDATA[
	<p>The objective of the study was to validate Estimated Placental Volume (EPV) in a</p>
<p>population of patients at Yale-New Haven Hospital (YNHH) across a range of gestational</p>
<p>ages, and to evaluate the association between small EPV and low birthweight (BW). From</p>
<p>2009 to 2011, 366 patients at YNHH received ultrasound scans between 11+0 to 38+6</p>
<p>weeks gestational age (GA) to measure placental dimensions from 2009 to 2011. EPVs were</p>
<p>calculated using a previously validated convex-concave shell equation. An EPV vs GA best</p>
<p>fit curve was generated. The relationship between EPV and BW was analyzed. Subgroup</p>
<p>analyses were performed to evaluate differences between study participants who delivered at</p>
<p>YNHH, and those who did not. Analysis of EPV versus gestational age revealed a parabolic</p>
<p>curve with the following best fit equation: EPV = (0.372 GA – 0.00364GA2)3. One hundred</p>
<p>seventy four of the 366 women who underwent EPV measurement delivered at Yale-New</p>
<p>Haven Hospital (YNHH) and had their infants’ BWs recorded. The remaining patients</p>
<p>delivered at outlying hospitals, where BWs were not available to the investigators. However,</p>
<p>parabolic EPV GA curves generated from these two patient populations were superimposable. YNHH patients with an EPV in the bottom 50th percentile had 2.42 times the odds of having a newborn with a BW in the bottom 50th percentile (95% CI 1.27 – 4.68). Microscopic evaluation of two placentas corresponding to the smallest EPV outliers revealed significant placental pathology. We conclude that placental volume increases throughout gestation and follows a predictable parabolic curve. Very low EPV measurements are associated with low BWs. Therefore, EPV may be useful as a screen to identify women who are carrying fetuses who are at risk for intrauterine growth restriction.</p>

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</description>

<author>Kimberly Marie Murdaugh</author>


</item>




<item>
<title>Insights On Fibrotic Diseases Using Single-Cell Analysis Methods</title>
<link>http://elischolar.library.yale.edu/ymtdl/2155</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2155</guid>
<pubDate>Thu, 06 Jul 2017 09:38:09 PDT</pubDate>
<description>
	<![CDATA[
	<p>Idiopathic pulmonary fibrosis is progressive, fatal lung disease with unclear mechanistic etiology and a dearth of treatment options. Transcriptional profiling has served a valuable tool in understanding the underlying perturbations in the lung tissues of patients and disease model systems, however whole tissue profiling obscures both the contribution of individual cells types in the diseased tissue as well as the contribution of non-fibrotic tissue surrounding the diseased tissue. The averaging effect confounds the ability to extract a strong disease signal and understand the cell-of-origin. Single-cell techniques have recently emerged that allow profiling of the transcriptomes of individual cells. In this work, we employ two state-of-the-art single cell RNA-seq techniques to IPF-relevant disease systems to understand cell specific contributions. In one set of experiments, we extracted and dissociated lung tissue from Tgfβ1 induced, as well as bleomycin injured mice systems. Single cells were isolated into individual wells using the Fluidigm C1 Auto Prep Array IFC system and single cell libraries were generated and sequenced. We observed the upregulation of fibroblast specific genes in cells with epithelial cell markers reinforcing theories of epidermal to mesenchymal transition.  In another set of experiments, we used a high-throughput, droplet-based system to study the knockdown of FENDRR, a novel long-non coding RNA (lncRNA) implicated in lung fibrosis in normal human lung fibroblasts (NHLFs). Here we observed cell-specific upregulation of genes associated with fibrosis and quiescence, as well as a stochastic effects demonstrating cell-cycling that would have otherwise been indiscernible without single-cell methods. In this work, we also address the significant challenges in creating robust single cell libraries using both human and mouse tissue. These challenges, shortcomings, and future opportunities for single-cell sequencing are highlighted.</p>

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</description>

<author>Azim Munivar</author>


</item>




<item>
<title>Medical Versus Surgical Management Of Native Joint Septic Arthritis In Adults: A Retrospective Comparison Of Outcomes Within The Va Ct Medical System</title>
<link>http://elischolar.library.yale.edu/ymtdl/2154</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2154</guid>
<pubDate>Thu, 06 Jul 2017 09:38:05 PDT</pubDate>
<description>
	<![CDATA[
	<p>Objective: Septic arthritis is a medical emergency with significant associated morbidity and mortality that requires joint drainage in addition to antibiotic therapy. Closed-needle aspiration and surgery (via arthrotomy or arthroscopy) are the standard approaches to joint drainage, though little data exists regarding treatment outcomes with each approach. We compared long-term outcomes for adult patients with septic arthritis of a native joint based on whether they received a ‘medical’ or ‘surgical’ approach to joint drainage.</p>
<p>Methods: We retrospectively reviewed all chart records for patients diagnosed with septic arthritis at the West Haven VA Medical Center between January 2006 and December 2015. Treatment outcomes were recorded at one year post-diagnosis.</p>
<p>Results: Sixty-two patients were diagnosed with native joint septic arthritis during the study period, 19 who were managed medically and 43 surgically. There was no significant difference in demographic variables, risk factors, clinical presentation, laboratory parameters, or duration of antibiotic therapy between the two groups. 81% of medically-managed patients and 82% of surgically-managed patients achieved a full recovery within 12 months. Overall mortality was 3.2%, and both patients who died were managed surgically. There were no significant predictors of poor treatment outcome aside from Black race.</p>
<p>Conclusion: Our findings suggest that medical management of septic arthritis with closed-needle aspiration is non-inferior to surgical management in terms of both morbidity and mortality. Given the small sample size, a prospective randomized control trial is needed to guide definitive recommendations on the best form of joint drainage</p>

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</description>

<author>Ian Mcconnell</author>


</item>




<item>
<title>Concussion Biomarker Discovery For Prognosis In Adolescent Athletes (compete) Pilot Study</title>
<link>http://elischolar.library.yale.edu/ymtdl/2153</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2153</guid>
<pubDate>Thu, 06 Jul 2017 09:38:02 PDT</pubDate>
<description>
	<![CDATA[
	<p>Concussion management in the ED is inconsistent due to a lack of available empirical testing. This project aims to assess the feasibility of a large multi-centered study for concussion biomarker discovery in the ED.</p>
<p>This prospective cohort pilot and feasibility study was conducted in the adult and pediatric EDs of an urban, academic, Level 1 trauma center. Twelve patients with concussions and twelve age- and gender-matched control patients presenting within 6 hours of an injury sustained during recreational activity were enrolled. ED blood specimens were banked for future proteomic analysis. Clinical outcomes were collected via online survey. Patient recruitment strategies were refined in three phases: (1) identification and notification by clinical staff, (2) email notification automatically-generated by the electronic health record (EHR), and (3) patient financial incentives provided at enrollment and upon completion of the symptom diary.</p>
<p>After Phase 1, the patient identification rate improved from 0% to 22% (p<0.001) with EHR-generated notifications. In Phase 3, the enrollment rate improved from 38% to 100% (p=0.01) with financial incentives.</p>
<p>This pilot and feasibility project is the first step to toward the goal of identifying new diagnostic and prognostic biomarkers as well as novel targets for therapy. EHR-based paging and financial incentives for participation increased subject identification and enrollment rate to inform and optimize the enrollment and recruitment strategies for the eventual larger study.</p>

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</description>

<author>Sean N. Mbachu</author>


</item>




<item>
<title>Ichthyosis: Assessing Severity And Genotype-Phenotype Correlations</title>
<link>http://elischolar.library.yale.edu/ymtdl/2152</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2152</guid>
<pubDate>Thu, 06 Jul 2017 09:37:59 PDT</pubDate>
<description>
	<![CDATA[
	<p>The ichthyoses, also known as disorders of keratinization (DOK), encompass a group of genetic skin disorders linked by the common finding of abnormal barrier function, which initiates a default compensatory pathway of hyperproliferation, resulting in the characteristic clinical manifestation of localized or generalized scaling.</p>
<p>Ichthyoses are a highly heterogenous group of disorders, both genetically and clinically. Despite the identification of causative mutations in over 50 genes, clear genotype-phenotype correlations have been difficult to establish due to the rarity of the ichthyoses and because mutations in the same gene can have widely divergent phenotypes, even in individuals with the same disease-causing mutation.</p>
<p>In partnership with the Foundation for Ichthyosis and Related Skin Types (FIRST), we have served as a major national and international referral center and recruited over 800 kindreds with DOK, utilizing whole exome sequencing to identify novel, rare mutations that cause DOK, many of which represent phenotypic expansion.</p>
<p>We systematically evaluated genotypic and phenotypic data for 407 kindreds with ichthyosis, the largest cohort published to date. We identified 156 novel mutations and assessed phenotypic features of DOK with respect to genetic diagnosis to help refine our understanding of this heterogeneous group of disorders (Chapter 1). Such a systematic classification of DOK holds promise for the development of customized management plans, generation of targeted therapeutics, and improved understanding of prognostication based on genetic diagnosis.</p>
<p>In the process of performing a large scale genotype-phenotype characterization, we identified kindreds with rare clinical subtypes of ichthyosis, including Bathing Suit Ichthyosis (BSI), a rare disorder caused by mutations in the transglutaminase 1 gene (TGM1) and characterized by the restriction of scale to sites of relatively higher temperature such as the trunk, with cooler areas remaining unaffected (Chapter 2). We identified novel and recurrent mutations in sixteen subjects with BSI, the largest cohort published to date. Our findings expand the genotypic spectrum of BSI and the understanding of temperature-sensitivity of TGM1 mutations.  Increased awareness of temperature-sensitive TGM1 genotypes should aid in genetic counseling, and provide insights into the pathophysiology of TGM1 ichthyoses, and potential therapeutic approaches.</p>
<p>In the course of unifying genetic and clinical data to advance the understanding of the different subtypes of ichthyosis, we realized the critical importance of tools to assess the clinical severity of ichthyosis. We designed a Visual Index for Ichthyosis Severity (VIIS) and tested the instrument for reliability and reproducibility using two different settings: one that utilized scoring of 60 test photographs by 10 dermatologists, and one with in-person evaluations on 85 subjects by 12 dermatologists at the Foundation for Ichthyosis and Related Skin Types (FIRST) conference (Chapter 3). The validation process revealed high reliability and reproducibility for both scale and erythema and indicated that the VIIS performs better in person than with photographs, an important consideration in design of clinical trials. This index provides a tool for clinical phenotyping and assessment of therapeutic response for many disorders of keratinization.</p>

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</description>

<author>Nareh Valerie Marukian</author>


</item>




<item>
<title>Pblcloud Virtual Patient Simulator: Enhancing Immersion Through Natural Language Processing</title>
<link>http://elischolar.library.yale.edu/ymtdl/2151</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2151</guid>
<pubDate>Thu, 06 Jul 2017 09:37:55 PDT</pubDate>
<description>
	<![CDATA[
	<p>PBLCLOUD VIRTUAL PATIENT SIMULATOR: ENHANCING IMMERSION THROUGH NATURAL LANGUAGE PROCESSING</p>
<p>Pierre Martin M.Ed.(1), Lisa DelSignore M.D.(2), and Traci A. Wolbrink M.D. M.P.H.(2)</p>
<p>(1)Yale School of Medicine (2)From the Division of Critical Care Medicine, Department of Anesthesia, Perioperative and Pain Management, Boston Children’s Hospital and the Department of Anesthesia, Harvard Medical School, Boston, MA, USA. (Sponsored by JH, Department of Pediatrics, Yale School of Medicine)</p>
<p>Virtual patient simulation has been utilized to teach interviewing skills, often employing selection-based methods (e.g., multiple-choice lists and menu-based prompts) to simulate doctor-patient conversations.  Users have evaluated these systems as inauthentic, which can diminish user immersion (influenced by control, realism, distraction and sensory factors) and, in turn, negatively affect skill acquisition, mastery and transfer.</p>
<p>Our objectives were to design and develop PBLCloud, a scenario-based and highly interactive platform that uses natural language processing to support a more realistic doctor-patient conversation and create an immersive clinical learning environment.</p>
<p>PBLCloud was developed utilizing an iterative design thinking process and its initial evaluation involved a mixed methods approach.  We recruited a convenience sample of 11 participants: three (27%) fourth-year medical students from Harvard Medical School as well as two (18%) residents, four (36%) fellows and two (18%) attendings from Boston Children’s Hospital.  There were two rounds of formative evaluation testing with eight participants in Round 1 and three participants in Round 2.  Each participant completed a semi-structured think–aloud protocol exploring our pilot case, 10-item system usability scale (SUS) and 10-item open-ended questionnaire.</p>
<p>The chat-based functionality provides users with computer-generated context-specific responses during the historical encounter.  Users have the opportunity to perform physical examinations, review incorporated multimedia, order and interpret diagnostic investigations, order therapeutic interventions that have appropriate effects on patient vitals and laboratory data, formulate and refine a differential diagnosis, receive just-in-time feedback regarding user-initiated actions and complete embedding learning exercises.  73% of participants strongly agreed that PBLCloud was useful (i.e., it is clinically-oriented, realistic, provides helpful feedback and is widely applicable) and 64% of participants strongly agreed that their experience with the system was enjoyable (i.e., it is relevant with an engaging interface).  It was deemed to be more interactive and engaging than other simulators and 82% of participants were very interested in utilizing the system in the future.  The average SUS score for Round 1 and 2 were 79.7 ± 12.0 and 82.5 ± 19.8 respectively.  Areas of improvement were identified, in particular, the unsatisfactory response accuracy of the chat-based functionality.</p>
<p>Future work will include the investigation of various strategies to optimize the platform’s natural language processing algorithm as well as the formal evaluation of the system’s validity, reliability, level of induced user immersion and educational impact.  We anticipate that PBLCloud will serve as a cost-effective and scalable approach for the instruction and assessment of clinical reasoning.</p>

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</description>

<author>Pierre Rodricus Martin</author>


</item>




<item>
<title>Non-Ethically Relevant Emotional Content Affects Decision In Difficult Ethical Dilemmas</title>
<link>http://elischolar.library.yale.edu/ymtdl/2150</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2150</guid>
<pubDate>Thu, 06 Jul 2017 09:37:52 PDT</pubDate>
<description>
	<![CDATA[
	<p>Non-ethically relevant emotional content affects decision in difficult ethical dilemmas</p>
<p>Brian S. Marcus, Mark R. Mercurio, Denise Esserman, Gary Kopf</p>
<p>Section of Cardiothoracic Surgery, Department of Surgery, Yale University, School of Medicine, New Haven, CT Objective: To evaluate the cognitive and affective factors which contribute to ethical evaluations by members of ethics committee (EC). Method: A total of 70 EC members at 4 large medical centers were given clinical vignettes and asked to make judgments. Each vignette had two versions and each EC member was randomly assigned one of the two versions to evaluate. The two versions differed only in affective content (likeability of agents) which had no bearing on the ethical issues. The EC members were then asked, using a 7-point Likert scale, to make an ethical judgment, and give an analysis as to what ethical principles they used in making their decision. Results: In two pairs of clinical ethical dilemmas, positive affect influenced the ethical evaluation in favor of the agent portrayed positively, and negative affect resulted in the opposite effect. In the clinical vignettes where there was no significant difference in any affective response to the agents of the evaluator, no difference in ethical decisions were seen between different versions of the vignette. Emotional content also had an effect on which ethical principles were used by EC members to explain their evaluations. Conclusion: Ethical evaluations by EC members are effected by non-ethically relevant emotive content of clinical scenarios. Emotional biases may play a significant role in the evaluation of ethical dilemmas, even though EC members may not be explicitly aware of them. Bioethical principles areused to rationalize these judgments after decisions have been made.</p>

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</description>

<author>Brian Marcus</author>


</item>




<item>
<title>Racial Disparities In Renal Cell Carcinoma: A Single Payer Healthcare Experience</title>
<link>http://elischolar.library.yale.edu/ymtdl/2149</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2149</guid>
<pubDate>Thu, 06 Jul 2017 09:37:49 PDT</pubDate>
<description>
	<![CDATA[
	<p>Introduction: Significant racial disparities in survival for renal cell carcinoma (RCC) exist between whites and blacks. Differences in access to care and comorbidities are possible contributors. To investigate if racial disparities persist when controlling for access to care, we analyzed data from a single payer healthcare system.</p>
<p>Methods: As part of a case-control study within the Kaiser Permanente Northern California system, pathologic and clinical records were obtained for RCC cases (2,152 white, 293 black) diagnosed from 1998 to 2008. Patient demographics, comorbidities, tumor characteristics, and treatment status were compared between whites and blacks. Overall survival and disease specific survival (DSS) were calculated by the Kaplan-Meier method. A Cox proportion hazards model was used to estimate the independent associations of race, comorbidity, and clinico-pathologic variables with DSS.</p>
<p>Results: Compared to whites, blacks were diagnosed at a younger age (median 62 vs. 66 years, p<0.001), were more likely to have papillary RCC (15% vs. 5.2%, p<0.001), and had similar rates of surgical treatment (78.8% vs. 77.9%, p=0.764).  On multivariate analysis, advanced AJCC stage, lack of surgical treatment, larger tumor size, and higher grade were predictors of worse DSS. Race was not an independent predictor of survival.</p>
<p>Conclusions: Within a single healthcare system, we observed differences in characteristics of black and white patients with RCC; black patients had different comorbidities, were younger, and had decreased tumor stage.  However, unlike other series, race was not an independent predictor of DSS, suggesting that survival differences in large registries may result from barriers to healthcare access and/or comorbidity rather than disease biology.</p>

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</description>

<author>Abiodun Mafolasire</author>


</item>




<item>
<title>Novel Application Of Untargeted Metabolomics To Diseases Of Neurosurgical Significance</title>
<link>http://elischolar.library.yale.edu/ymtdl/2148</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2148</guid>
<pubDate>Thu, 06 Jul 2017 09:37:45 PDT</pubDate>
<description>
	<![CDATA[
	<p>Metabolomics, an emerging technique to study hundreds of small-molecule metabolites simultaneously, has been seldom applied to diseases of neurosurgical significance. We utilized metabolomics to explore two distinct questions: 1. to identify global metabolic changes and metabolite predictors of long-term outcome in aneurysmal subarachnoid hemorrhage (SAH) patients, 2. to identify differential metabolites profiles of radiation necrosis vs. recurrent tumor of metastatic brain lesions post-Gamma Knife radiosurgery. The first study applied gas chromatography time-of-flight mass spectrometry (GC-TOF) to cerebrospinal fluid samples collected from 15 high-grade aSAH patients (modified Fisher grades 3 and 4). Analysis was performed at two time points; metabolite levels at each time point were correlated with Glasgow Outcome Scale (GOS) of patients at 1 year post-aSAH. Of 97 metabolites identified, 16 metabolites (primarily free amino acids) significantly changed between the two time points; these changes were magnified in modified Fisher grade 4 compared with grade 3. Six metabolites (2-hydroxyglutarate, tryptophan, glycine, proline, isoleucine, and alanine) correlated with GOS at 1 year post-aSAH. These results suggest that specific metabolite changes occur in the brain during the course of aSAH and that quantification of specific CSF metabolites may be used to predict long-term outcomes. This is the first study to implicate 2- hydroxyglutarate, a known marker of tissue hypoxia, in aSAH pathogenesis. The second study applied GC- TOF to histologically-validated specimens (7 each) of pure radiation necrosis and pure recurrent tumor obtained from patient brain biopsies. Of 141 metabolites identified, 17 were found to be statistically significantly different between comparison groups. Of these metabolites, 6 were increased in tumor, and 11 metabolites were increased in radiation necrosis. An unsupervised hierarchical clustering analysis found that tumor had elevated levels of metabolites associated with energy metabolism whereas radiation necrosis had elevated levels of metabolites that were fatty acids and antioxidants/cofactors. This is the first tissue- based metabolomics study of radiation necrosis and tumor. Radiation necrosis and recurrent tumor following Gamma Knife radiosurgery for brain metastases have unique metabolite profiles that may be targeted in the future to develop non-invasive metabolic imaging techniques.</p>

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</description>

<author>Alex Yang Lu</author>


</item>




<item>
<title>Operationalizing Value-Based Healthcare Strategies: Data Sharing &amp; Cost Measurement In Orthopaedics</title>
<link>http://elischolar.library.yale.edu/ymtdl/2147</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2147</guid>
<pubDate>Thu, 06 Jul 2017 09:37:42 PDT</pubDate>
<description>
	<![CDATA[
	<p>Value in healthcare is defined as outcomes divided by the cost to achieve them. In a healthcare system under increasing scrutiny to serve more patients at lower costs, pursuing value-driven strategies aligns the incentives of healthcare’s various stakeholders to provide better outcomes for patients at lower costs.</p>
<p>New models for data sharing can help clinicians and patients decide which interventions will best drive improved outcomes if they allow the exploration of the totality of available evidence. The controversy surrounding the safety of recombinant human bone morphogenetic protein-2 (rhBMP-2) provides a case example of putting the Yale Open Data Access (YODA) Project into practice. A review of the existing literature showed complications including heterotopic ossification, postoperative radiculitis, and endplate osteolysis associated with the use of rhBMP-2 in posterior spinal fusion techniques.</p>
<p>Given that two expert groups were provided with the same data and general aims, it was hypothesized that approaches and results of two independent systematic reviews and meta-analyses would be highly similar. An analysis of these reviews showed that they used different methodological approaches, with one center choosing to stratify by surgical approach and the other group combining data from all approaches. Results were broadly similar though there were some important differences. One center found a statistically significant, but small, benefit whereas the other center reported no advantage in comparing rhBMP-2 and control groups. In the analysis of harms, neither showed an increased cancer risk at 48 months, although one center reported a significant increase at 24 months. Conclusions reflected these differences in summary estimates of benefit balanced with small but potentially important risk of harm. Replication of systematic reviews are valuable as even expert groups looking at the same data may come to different conclusions.</p>
<p>Though efforts like data sharing can help clinicians better understand healthcare outcomes, measuring costs is a critical step in understanding and managing resource usage to improve value in healthcare. Time Driven Activity based Costing (TDABC) is a financial accounting methodology which can more accurately measure costs in orthopaedic surgery than commonly used hospital accounting methodologies. This methodology was put into practice in an academic medical center for primary total knee and hip arthroplasty patients of three surgeons. This accounting method requires the creation of process maps which detail the various steps of delivering total joint arthroplasty before combining them with financial data to derive an episode cost. This process itself can identify areas for process improvement.  This process identified actionable areas of process improvement in weekend discharge, blood transfusion rates, anesthesia impacts on length of stay, patient waiting times, operating room turnover delays due to peripheral nerve block placement, and an opportunity for patient clinical and administrative optimization before surgery.</p>
<p>The implementation of TDABC methodology not only can lead to more accurate cost accounting in total joint replacement but uncover opportunities for operational improvement.</p>

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</description>

<author>Jeffrey Low</author>


</item>




<item>
<title>Down-Regulation Of Sema4d On Follicular T Helper Cell Fine-Tunes Germinal Center B Cell Response</title>
<link>http://elischolar.library.yale.edu/ymtdl/2146</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2146</guid>
<pubDate>Thu, 06 Jul 2017 09:37:39 PDT</pubDate>
<description>
	<![CDATA[
	<p>Follicular helper T (TFH) cells are a specialized subset of CD4+ T cells essential for the affinity-based selection of B cells in the germinal center (GC). However, it remains unclear how transient entanglement between TFH and GC B cells lead to selective B cell proliferation and differential somatic hypermutation, especially given the evidence that BCR signaling is closely guarded by phosphatases within the GC. Here we present a model involving the interaction between SEMA4D on TFH cells and CD72 on GC B cells. We found that as the GC response progressed during acute murine lymphocytic choriomeningitis virus infection, TFH cells temporally downregulated surface expression of SEMA4D, accompanied by increased CD40L expression and decreased IFNγ and IL-21 production.  Different levels of SEMA4D expression on TFH cells correlated with significantly varied phosphorylation levels of B cell receptor signaling cascade molecules Syk, Btk, BLNK, and tyrosine kinases as a whole.  Such variations in B cell receptor signaling in GC B cells affected their proliferation, localization, and somatic hypermutation. Therefore, TFH cells utilize SEMA4D and its temporal down-regulation to regulate affinity maturation and fine-tune selective pressure over GC B cells over the course of the GC response.</p>

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</description>

<author>Ningcheng Li</author>


</item>




<item>
<title>Genetics Of Chemotherapy Response In Triple Negative Breast Cancer</title>
<link>http://elischolar.library.yale.edu/ymtdl/2145</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2145</guid>
<pubDate>Thu, 06 Jul 2017 09:37:36 PDT</pubDate>
<description>
	<![CDATA[
	<p>Triple Negative Breast Cancer (TNBC) encompasses a wide range of treatment responses, however there are no predictive biomarkers approved for clinical use to target therapy. With a novel exome analysis method, we discovered that the overall proportion of the homologous recombination repair (HRR) genes affected by structural variation can accurately predict both positive and negative chemotherapy response prior to initiation of therapy in the large majority of patients in our cohort.</p>
<p>We analyzed exome sequences of unpaired tumor samples, collected prior to ACT chemotherapy, in 17 TNBC patients who exhibit complete pathologic response to neoadjuvant chemotherapy (pCR) and 15 patients who had extensive residual disease (RD).</p>
<p>In the process, we created one of the first analytical pipelines capable of performing comprehensive integrated analysis of somatic point mutations and structural variation in unpaired tumor exome samples. Validation on tumor-normal matched samples demonstrated >95% specificity for point mutations, LOH, and CNV calling compared to standard tumor-normal somatic analysis.</p>
<p>When applied to the TNBC cohort, our somatic mutation caller identified multiple damaging somatic mutations in genes linked to EMT. LOH analysis showed significantly greater LOH in pCR (Complete Response) than RD patients (Residual Disease) (p=6.5E-12). The five regions with greatest LOH difference between pCR and RD subgroups each contained a HRR gene locus. Overall high LOH burden was associated with the presence of TP53 point mutations (p=0.002).</p>
<p>By integrating data from all three methods, we found significantly more pCR patients with high mutation burden (including CNV and LOH) in homologous recombination repair genes than RD patients (83% vs 20%). With this metric, we can predict 83% of positive response and 80% of negative response based on our patients’ genomic profiles prior to chemotherapy initiation (OR=18.7, 95% CI= 3.2 to 110.3, p=0.0012).</p>
<p>This result offers a potential significant improvement in our ability to personalize therapy in TNBC and may facilitate development of targeted PARP inhibitor therapeutics.</p>

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</description>

<author>Charles Li</author>


</item>




<item>
<title>The Role Of Muscarinic M1-Kcnq Signaling In Working Memory Circuits Of The Prefrontal Cortex: A New Pharmacological Target For Cognitive Function</title>
<link>http://elischolar.library.yale.edu/ymtdl/2144</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2144</guid>
<pubDate>Thu, 06 Jul 2017 09:37:33 PDT</pubDate>
<description>
	<![CDATA[
	<p>Schizophrenia is associated with profound cognitive deficits, including profound impairments in working memory that drive occupational, social and economic disabilities [1, 2]. Patients with Schizophrenia have profound deficits in the working memory functions of the dlPFC that correlate with symptoms of thought disorder [3].</p>
<p>Persistent activity across a delay period is considered the neuronal basis of working memory, which is generated by recurrent activity among a group of layer III PFC pyramidal cells, that excite each other via NMDA receptor synapses on dendritic spines. NMDAR requires a depolarized membrane to open; in some areas of the brain (e.g. visual cortex) this is done by AMPAR, but acetylcholine performs this function in layer III PFC, through actions at nicotinic a7 receptors [4], and possibly, through muscarinic M1 receptor (M1R) closing of M-type KCNQ potassium channels in the synaptic membrane.</p>
<p>Immunoelectron microscopy data has demonstrated the presence of both M1R and KCNQ in glutamate-like synapses in layer III of primate dlPFC. This study aimed to test the hypothesis that stimulation of the M1R would enhance working memory though closure of hyperpolarizing KCNQ channels. To examine the role of the M1-KCNQ signaling pathway in working memory, we tested the effect of agents that modulated M1R and the KCNQ channel on neuronal activity in dlPFC.</p>
<p>Single unit neuronal recordings were performed in non-human primates performing a working memory task. Drugs manipulating M1R and KCNQ were iontophoresed onto the recording site and the effect on firing was captured by a carbon fiber electrode.</p>
<p>We found that both M1R activation and KCNQ blockade enhanced working memory related activity in the monkey dlPFC (p<0.01) while M1R blockade (p<0.0001) and KCNQ channel opening (p<0.01) reduced neuronal activity in the dlPFC. Finally, the effect of the M1R was found to be influenced by the open state of the KCNQ channel. Reduced firing from M1R blockade in the dlPFC was reversed by closure of KCNQ channel (p<0.01).</p>
<p>The current study shows that both M1R and KCNQ channels regulate working memory circuitry at the neuronal level.  The effects of M1R on neural activity in the working memory circuitry, is mediated by the open state of KCNQ channel. These findings suggest that M1R activation is a viable strategy to enhance working memory circuits and maybe be a potential target for agents developed to improve cognition. This strategy would have special relevance to cognitive dysfunction in schizophrenia, as patients have been found to have working memory deficits and downregulation of the M1R in working memory circuitry of the dlPFC [5].</p>

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</description>

<author>Taber C. Lightbourne</author>


</item>




<item>
<title>Polarization Of Cystic Fibrosis Macrophages Is Dysregulated</title>
<link>http://elischolar.library.yale.edu/ymtdl/2143</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2143</guid>
<pubDate>Thu, 06 Jul 2017 09:37:29 PDT</pubDate>
<description>
	<![CDATA[
	<p>We hypothesize that intrinsic defects in cystic fibrosis (CF) macrophages affect their ability to adequately respond to extracellular stimuli, affecting their phenotypic response and contributing to a hyper-inflammatory state.</p>
<p>Peripheral blood-derived monocytes from healthy donors (HD) (n=10) as well as CF subjects (n=10) were differentiated into macrophages using RPMI media with 50 ng/mL of MCSF for 10 days. Cells were treated with 100 ng/mL of LPS plus 20 ng/mL of INF-gamma to activate the M1 phenotype or 20 ng/mL of IL-4 to activate the M2 phenotype. Cells were treated for 24 hours in preparation for RNA isolation and 3 hours in preparation for protein isolation. RNA was isolated and reverse transcribed to cDNA in preparation for qualitative, reverse transcription polymerase chain reaction (qRT-PCR). qRT-PCR was performed using IL-6, IL-1B, and TNF-alpha primers as M1 markers and TGF-B1, MRC, PPAR-gamma as M2 markers. Expression levels were performed in seven experiments, each using a different set of HD and CF subjects, utilizing 8.0 x 10^5 to 1.0 x 10^6 cells per well, while three protein experiment were done using different sets of HD and CF subjects.</p>
<p>Stimulation of CF macrophages induces greater phosphorylation of proteins that regulate macrophage activation, as compared to HD macrophages. When CF macrophages are challenged with LPS/INF-gamma, they show greater phosphorylation of STAT1 protein as compared to HD macrophages. Similarly, when CF macrophages are challenged with IL-4, they exhibit greater phosphorylation of STAT6 protein, as compared to HD macrophages. Finally, CF macrophages show greater phosphorylation of AKT protein as compared to HD macrophages when stimulated with both M1 and M2 cytokines. As expected, HD macrophages (n=7, experiments) demonstrated appropriate plasticity and polarization with increased expression of M1 markers and decreased expression of M2 markers in response to LPS/INF-gamma. Furthermore, they demonstrated modestly increased expression of M2 markers and decreased expression of M1 markers in response to IL-4. In marked contrast, when stimulated with LPS/INF-gamma CF macrophages (n=7, experiments) demonstrated hyper-inflammation with dramatically increased expression levels of M1 markers as well as aberrant polarization as evidenced by increased expression levels of some M2 makers. Aberrant polarization was further characterized by increased expression of M1 markers in the presence of IL-4 in addition to increased expression of M2 markers.</p>
<p>These data suggest that lack of functioning CFTR in macrophages leads to the inability of macrophages to adequately respond to environmental cues and activate into appropriate phenotypes suggesting there is an intrinsic cellular defect. Moreover, the mechanism(s) that underlie these aberrant responses likely involve altered intracellular signal transduction which is currently under investigation.</p>

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</description>

<author>Evan Jacob Levy</author>


</item>




<item>
<title>Comparing The Efficacy Of Tranexamic Acid And Aminocaproic Acid In Posterior Spinal Fusion For Adolescent Idiopathic Scoliosis</title>
<link>http://elischolar.library.yale.edu/ymtdl/2142</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2142</guid>
<pubDate>Thu, 06 Jul 2017 09:37:26 PDT</pubDate>
<description>
	<![CDATA[
	<p>COMPARING THE EFFICACY OF TRANEXAMIC ACID AND AMINOCAPROIC ACID IN POSTERIOR SPINAL FUSION FOR ADOLESCENT IDIOPATHIC SCOLIOSIS. Yunsoo A. Lee and Brian G. Smith. Department of Orthopedics, Yale University, School of Medicine, New Haven, CT.</p>
<p>Objective: To compare the efficacy of tranexamic acid and aminocaproic acid in decreasing blood loss and blood transfusion requirements during posterior spinal fusion for the treatment of adolescent idiopathic scoliosis.</p>
<p>Background: Due to the extent of the operation, posterior spinal fusion is associated with significant blood loss often requiring blood transfusions that increase the risk of morbidity and mortality. Antifibrinolytic medications, mainly tranexamic acid (TXA) and aminocaproic acid (Amicar), have been shown to reduce blood loss and blood transfusion requirements in studies on surgery for scoliosis. Our study compares the efficacy of using TXA and Amicar to using no anti-fibrinolytic in reducing blood loss and blood transfusion requirements.</p>
<p>Methods: A retrospective chart review was performed on all patients with idiopathic scoliosis undergoing exclusive posterior spinal fusion from 2008 to 2016 at one institution. Patients were put into three groups, a historical control group that was not given anti-fibrinolytics (67), a group given TXA (46), and a group given Amicar (21). There were no significant differences in age, gender, number of fused vertebrae, or Major Cobb angle between the three groups.</p>
<p>Results: The TXA group required significantly fewer average units of packed red blood cell (PRBC) transfusion (1.76 ± 1.25) than the control group (2.57 ± 1.41). The Amicar group (2.24 ± 1.04) did not demonstrate a significantly reduced blood transfusion requirement. There were no significant differences seen in intraoperative estimated blood loss across the three groups. Multiple regression analysis showed that TXA was significantly associated with a reduction in PRBC transfusion and that the number of vertebrae levels fused was significantly associated with an increase in blood transfusion. In contrast, Amicar did not demonstrate a statistically significant reduction in blood transfusion requirements.</p>
<p>Conclusion: We analyzed 134 patients who underwent posterior spinal fusion for adolescent idiopathic scoliosis to compare the effects of tranexamic acid (TXA) and aminocaproic acid (Amicar) to a control group given no anti-fibrinolytic therapy. TXA was found to significantly decrease packed red blood cell transfusion requirements while Amicar did not show a statistically significant change. Neither were associated with a decrease in intraoperative estimated blood loss.</p>

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</description>

<author>Yunsoo Lee</author>


</item>




<item>
<title>Patient-Centric Medical Notes: Identifying Areas For Improvement In The Age Of Open Medical Records</title>
<link>http://elischolar.library.yale.edu/ymtdl/2141</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2141</guid>
<pubDate>Thu, 06 Jul 2017 09:37:23 PDT</pubDate>
<description>
	<![CDATA[
	<p>Patients are increasingly provided facilitated access to their medical notes. Physicians have reported concerns that patients will find notes confusing and offensive, and that typographical errors will appear unprofessional. This exploratory study quantifies the prevalence of potentially confusing or offensive medical language and typographic errors within inpatient notes. The authors performed a retrospective, cross-sectional review of 400 inpatient History and Physical notes from a tertiary care center. All notes were from admissions to general internal medicine services. Words and phrases of interest were codified into five pre-established categories. The authors analyzed 231 hospitalist and 106 resident notes. The most prevalent characteristics identified per note were General Medical Acronyms (99.1%), Medical Jargon (96.7%), and Typographical Errors (49%). Residents used a greater absolute number of acronyms and abbreviations (p<.01). When adjusted to a standardized note length, hospitalist notes contained more Medical Jargon and Typographical Errors (p<.05). All subdivisions within Subjective Descriptors and Mental Health & Sensitive Health Status appeared in less than 20% of all notes. While the place of medical shorthand, jargon, and sensitive history in the medical note is unlikely to change in the near future, this study identifies typographical errors as a modifiable area for improvement. The examination of medical note language may prove beneficial to the patient-physician relationship in the digital era.</p>

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</description>

<author>Eric H. Lee</author>


</item>




<item>
<title>Clustering Of Suicide In Brazilian Indigenous Children And Youth: Implications For Interventions</title>
<link>http://elischolar.library.yale.edu/ymtdl/2140</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2140</guid>
<pubDate>Thu, 06 Jul 2017 09:37:20 PDT</pubDate>
<description>
	<![CDATA[
	<p>CLUSTERING OF SUICIDE IN BRAZILIAN INDIGENOUS CHILDREN AND YOUTH: IMPLICATIONS FOR INTERVENTIONS.</p>
<p>Thomas Lazzarini, Crhistinne Gonçalves, Julio Croda, Albert Ko, Walter Benites, Liliane da Silva, Kristen McLean, Jason Andrews, Daniel Henrique Tsuha, and Robert Rohrbaugh. Department of Psychiatry, Yale University, School of Medicine, New Haven, CT.</p>
<p>Abstract: The purpose of this study was to conduct a retrospective cohort study as well as a qualitative study to better understand the current context of suicide among the indigenous population living on the reservations surrounding Dourados, Brazil. Critical questions included: What are the most important suicide risk factors? Which communities have the highest rates? What differences exist between higher-risk and lower-risk communities? The Brazilian National Mortality Database (SIM), the Special Indigenous Information System (SIASI), as well as the national census (IBGE) were utilized to estimate an overall suicide rate of 73·4 per 100,000 population per year in the reservation communities. The peak risk for males is during adolescence (15-19) and the peak risk for females is during late childhood (10-14). There was strong evidence for the clustering of suicides by time and geography as well as within extended families among this population. A comparison between two neighboring communities with a 5-fold difference in suicide rate demonstrated that the community with a higher suicide rate suffers from greater poverty and structural barriers to health care. Interventions must focus on children and youth living within the household of suicide victims as well as structural interventions to improve economic opportunities and access to healthcare in highly affected communities.</p>

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</description>

<author>Thomas Lazzarini</author>


</item>




<item>
<title>Family Life Events In The First Year Of Acute Lymphoblastic Leukemia Therapy</title>
<link>http://elischolar.library.yale.edu/ymtdl/2139</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2139</guid>
<pubDate>Thu, 06 Jul 2017 09:37:17 PDT</pubDate>
<description>
	<![CDATA[
	<p>Despite remarkable advances in cure rates, childhood acute lymphoblastic leukemia (ALL) may continue to result in considerable family strain. We sought to 1) measure incidence of divorce, reduced career opportunities, changes to work hours, home relocation, and changes to family planning at one year after ALL diagnosis 2) identify family and patient factors associated with these events. We conducted a prospective cohort study of 159 children with average risk-ALL enrolled and treated on COG protocol AALL0331 at 31 selected sites. In the first year of ALL treatment, 46% of parents lost a job, 13% divorced/separated, 22% decided not to have more children, 51% declined occupational opportunities, 68% decreased work hours, and 27% of families relocated homes. In adjusted analyses, no unifying factors were associated with all family events. Relocation correlated with less maternal education (OR: 4.27 [95% CI: 1.43-12.82]). Declining parental opportunities associated with family income <$50,000 (OR: 4.25 [95% CI: 1.50-12.02]) and child <5 years old (OR: 4.21 [95% CI: 1.73-10.25]). Deciding not to have more children correlated with smaller family size 2-3 vs.4-5 (OR: 3.62 [95% CI: 1.10-11.96]). In summary, childhood ALL still confers a substantial family burden, especially in the earlier stages of treatment.</p>

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</description>

<author>Samantha Lau</author>


</item>




<item>
<title>Three Dimensional Reconstructions Of Nephrons In Kidneys Disease</title>
<link>http://elischolar.library.yale.edu/ymtdl/2138</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2138</guid>
<pubDate>Thu, 06 Jul 2017 09:37:10 PDT</pubDate>
<description>
	<![CDATA[
	<p>Previous studies have demonstrated that the loss of polycystins results in exaggerated cilia dependent cyst activating signaling, which results in pathologic tubule remodeling. Because the cilia polycystin complex can function as a flow sensor, we sought to evaluate whether an increase in glomerular filtration rate can modulate tubule diameter and, in pathologic cases, reproduce the cystic phenotype. We employed a compensatory nephrectomy model to induce hyperfiltration in the context of 1) a normal physiologic response and 2) the reduced expression of polycystin 1, which we hypothesized can sensitize the kidney to abnormal remodeling. To accomplish this, we use multiphoton microscopy and optimized image analysis techniques to accurately detect morphological changes in response to hyperfiltration. Our data demonstrated a reproducible 20% increase in tubular cross sectional area in response to nephrectomy in both WT and PKD heterozygote models. These studies not only support a model of tubular flow adaptation, but also demonstrate that the reduction of polycystin-1 in the context of hyperfiltration is insufficient to cause abnormal remodeling of tubular cross sectional area. Just as importantly, we also observed increased nuclear densities and lumen cross sectional areas that was concomitant with decreased tubular cell volumes in the PKD heterozygotes. We later extend our analysis into the inducible homozygous knockout of polycystin-1 where we modeled the morphologic changes that occur in the initial phase of cytogenesis.</p>

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</description>

<author>Elizabeth Chen Kurtz</author>


</item>




<item>
<title>Prognostic Thresholds For Lymph Node Yield: Proposing Quality Metrics In Oral Cavity Cancer</title>
<link>http://elischolar.library.yale.edu/ymtdl/2137</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2137</guid>
<pubDate>Thu, 06 Jul 2017 09:37:07 PDT</pubDate>
<description>
	<![CDATA[
	<p>Prognostic lymph node yield thresholds have been identified and incorporated into national treatment guidelines for multiple cancer sites, but not for head and neck cancers. The objective of this study was to identify optimal thresholds in elective and therapeutic neck dissection for oral cavity cancers.</p>
<p>To accomplish this objective, patients with oral cavity cancers in the National Cancer Database (NCDB) were stratified into clinically lymph node-negative (cN0) and clinically lymph node-positive (cN1) cohorts to reflect the differing surgical management for these diseases. Univariate and multivariate analyses were performed to assess the relation between lymph node yield and overall survival, adjusting for other prognostic factors. Thresholds derived from the NCDB were validated in the Surveillance, Epidemiology, and End Results (SEER) database.</p>
<p>We found that increasing lymph node yield was linearly associated with improved survival up to 35 lymph nodes when controlling for other prognostic factors. In patients with cN0 cancers of the oral cavity from the NCDB, those who had <16 lymph nodes had significantly decreased survival. The proportion of positive lymph nodes was higher for patients who had 16 lymph nodes (27.2% vs 16.3% for<16 lymph nodes; p<0.001). This threshold was validated in 2,715 lymph node-negative cancers from SEER, with a mortality hazard ratio of 0.818 for ≥16 lymph nodes (95% confidence interval, 0.695-0.963; p=0.016). In patients with cN1 oral cavity cancers from the NCDB, groups with <26 lymph nodes had significantly decreased survival. This threshold was validated in 1,903 lymph node-positive cancers from SEER, with a mortality hazard ratio of 0.790 (95% confidence interval, 0.692-0.902; p<0.001). Academic centers, higher volume centers, and geographic location predicted higher lymph node yields.</p>
<p>In summary, more extensive neck dissection (≥16 lymph nodes in cN0, ≥26 lymph nodes in cN1) was associated with better survival. These findings are applicable as quality metrics are established in performance measurements in healthcare. Further evaluation of practice patterns in lymph node yield may represent an opportunity for improved quality of care.</p>

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</description>

<author>Phoebe Kuo</author>


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<item>
<title>The Patient Perspective: Prophylactic Bilateral Salpingo-Oophorectomy At The Time Of Benign Hysterectomy</title>
<link>http://elischolar.library.yale.edu/ymtdl/2136</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2136</guid>
<pubDate>Thu, 06 Jul 2017 09:37:04 PDT</pubDate>
<description>
	<![CDATA[
	<p>Bilateral salpingo-oophorectomy (BSO) at the time of hysterectomy for benign disease is a complicated decision due to the conflicting evidence about the health effects of BSO and ovarian cancer risk in the general population. This decision is based on the patient’s baseline background and understanding of these topics in addition to the counseling provided to her by her physician. This study aims to identify 1) patient preference regarding BSO, specifically the oophorectomy component, 2) opinions on health outcomes related to BSO, and 3) perceived physician counseling patterns for the decision for prophylactic BSO at the time of hysterectomy. A pilot survey study of 50 women scheduled to undergo hysterectomy for benign etiologies was conducted at Yale New Haven Hospital. Only 9 (18%) patients underwent BSO with hysterectomy. For women undergoing BSO, reducing ovarian cancer risk was the most important reason in making their decision, whereas for women who chose ovarian conservation, ‘menopause symptoms’ was the most common primary motivator. In general women were most concerned about ‘menopause symptoms’ among the health effects of BSO. While patients received more counseling from their physician prior to surgery about BSO and associated health effects compared to individual ovarian cancer risk factors, 18% and 50% respectively did not receive any counseling in either category, including topics such as reduction in ovarian cancer risk through BSO, family history of cancer, and long-term health effects of surgical menopause. Almost half (48%) of women had an opinion about BSO prior to counseling by the physician with only 16% of those with an opinion changing their mind about performing the procedure following counseling. Finally, majority of women felt the physician took their opinion into account (86%) and they had the ultimate say in the decision for BSO with hysterectomy (82%). In conclusion, ‘menopause symptoms’ was the most prominent factor for women in making the decision about BSO. While patients did feel involved in the decision-making process, there was inadequate counseling by physicians about health effects of BSO/oophorectomy and ovarian cancer risk in the study group. This data will aid in developing an individualized shared decision making tool which may help women make a more informed decision about BSO.</p>

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</description>

<author>Yukiko Kunitomo</author>


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<item>
<title>The Efficacy Of Benzodiazepines As Acute Anxiolytics In Children: A Meta-Analysis</title>
<link>http://elischolar.library.yale.edu/ymtdl/2135</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2135</guid>
<pubDate>Thu, 06 Jul 2017 09:37:01 PDT</pubDate>
<description>
	<![CDATA[
	<p>Objective: Current practice guidelines do not recommend benzodiazepines for acute management of anxiety disorders in pediatric patients. However, in procedural settings, benzodiazepines are commonly used to relieve acute pre-procedural stress. This meta-analysis examines the efficacy and tolerability of benzodiazepines as short-term anxiolytics in children.</p>
<p>Method: PubMed was searched for randomized controlled trials assessing the efficacy of benzodiazepines as short-term anxiolytics in pediatric patients. Twenty-one trials involving a total of 1,416 participants were included. A fixed effects model was used to examine the standardized mean difference of improvement in anxiety levels compared to control conditions. In stratified subgroup and meta-regression, the effect of the specific agent, dose, timing, and setting of benzodiazepine treatment was examined.</p>
<p>Results: A significant benefit was seen for benzodiazepines compared to control (standardized mean difference = 0.71 [95% confidence interval, 0.60-0.82], k = 24, z = 12.7, p<0.001).   There was also funnel plot asymmetry in this meta-analysis, suggesting some evidence of publication bias.  Moderator analyses found that when benzodiazepines were used in dental or non-operating room procedures, they were more effective than when they were used in operating room procedures (test for subgroup differences Q2 = 6.34, p=0.04). Tolerability analysis revealed there was no significant difference in the risk of developing irritability or behavioral changes between benzodiazepine and control groups.</p>
<p>Conclusions: Benzodiazepines are effective and well-tolerated when used as short-term anxiolytics in procedural settings for pediatric patients. Further research is needed to determine whether benzodiazepines are effective in pediatric anxiety disorders.</p>

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</description>

<author>Heide Kuang</author>


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<item>
<title>Contemporary Disengagement From Antiretroviral Therapy In Khayelitsha, South Africa</title>
<link>http://elischolar.library.yale.edu/ymtdl/2134</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2134</guid>
<pubDate>Thu, 06 Jul 2017 09:36:57 PDT</pubDate>
<description>
	<![CDATA[
	<p>Background</p>
<p>Retention in care is an essential component of meeting the UNAIDS “90-90-90” HIV treatment targets. In Khayelitsha township (population ~500,000) in Cape Town, South Africa, more than 50,000 patients have received ART since the inception of this public sector program in 2001. Disengagement from care remains an important challenge. We sought to determine the incidence of and risk factors associated with disengagement from care in 2013-4, and outcomes for those who disengaged.</p>
<p>Methods</p>
<p>We conducted a retrospective cohort study of all patients >= ten years of age who visited one of the 13 Khayelitsha ART clinics in 2013-14 regardless of the date they initiated ART. We described the cumulative incidence of first disengagement (>180 days) between 1 Jan 2013- 31 Dec 2014 by time on ART and time in the study using a competing risks model, which enabled us to extrapolate disengagement incidence up to ten years after ART initiation. We also described risk factors for disengagement based on a Cox proportional hazards model. We ascertained outcomes (death, return to care, hospital admission, other hospital contact, alive but not in care, no information) after disengagement until 30 June 2015 using province-wide health databases and the National Death Registry.</p>
<p>Results</p>
<p>Of 39,884 patients meeting our eligibility criteria, the median time on ART to 31 December 2014 was 33.6 months (IQR 12.4-63.2). Of the total study cohort, 592 (1.5%) died in the study period, 1,231 (3.1%) formally transferred out, 987 (2.5%) were “silent transfers” and visited another provincial clinic within 180 days, 9,005 (22.6%) disengaged, and 28,069 (70.4%) remained “in care.” Cumulative incidence of disengagement from care was 25.1% by five years on ART and 37.7% by ten years on ART estimated from time contributed in the study window in the competing risks model. Key factors associated with disengagement were age <30 years (10-20 years HR 1.38, 95% CI 1.24-1.54; 20-30 years HR 1.46, 95% CI 1.38-1.54; both relative to reference 30-40 years), male sex, pregnancy at ART start, and last CD4 count <350 cells/μl  (CD4 <50 HR 3.34, 95% CI 2.92-3.83; CD4 50-200 HR 3.07, 95% CI 2.84-3.31; CD4 200-350 HR 2.03, 95% CI 1.91-2.15, all relative to reference CD4 >350 cells/μl); protective factors were ART club membership and baseline CD4 <350 cells/μl (CD4<50 HR 0.39, 95% CI 0.35-0.44; CD4 50-200 HR 0.46, 95% CI 0.43-0.50; CD4 200-350 HR 0.6, 95% CI 0.56-0.65, all relative to reference CD4 > 350 cells/μl) (Table 1). Of those who disengaged, the two most common outcomes by 30 June 2015 were return to ART care after 180 days (33%), and being alive but not in care in the Western Cape (25%). After disengagement, a total of 1,459 (16.2%) patients were hospitalized and 237 (2.6%) died.</p>
<p>Conclusions</p>
<p>One quarter of patients in Khayelitsha, one of the longest running ART programs in South Africa, disengaged from ART care at least once in a contemporary two-year period. One key aspect of the HIV care cascade is retention in care. While the majority of patients either subsequently returned to care or remained alive without hospitalization, a challenge to meeting retention targets, and the broader 90-90-90 HIV treatment targets, is developing, testing, and implementing program designs to target mobile populations and retain them in lifelong care. This should be guided by risk factors for disengagement as observed in this and other studies. Additionally, some focus should be placed on preventing misclassification of patients with regards to retention status by utilizing better patient tracking systems.</p>

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</description>

<author>Samantha Kaplan</author>


</item>




<item>
<title>National And Institutional Outcomes Data In Head And Neck Cancers, And Functional And Patient Reported Outcomes In Patients With Oropharyngeal Cancers</title>
<link>http://elischolar.library.yale.edu/ymtdl/2133</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2133</guid>
<pubDate>Thu, 06 Jul 2017 09:36:54 PDT</pubDate>
<description>
	<![CDATA[
	<p>Background and Purpose: To determine the availability of outcomes data to head and neck cancer patients. To create a database of comprehensive information including demographics, process metrics, and outcomes for head and neck cancer patients who were diagnosed or treated at a Yale New Haven Hospital affiliate. To examine factors affecting functional and patient reported outcomes in patients with oropharyngeal cancers.</p>
<p>Materials and Methods: The websites of all NCI-designated Cancer Centers and all affiliated institutions were examined for publicly available data regarding head and neck cancer patients. For Yale data, IRB approval was obtained to use tumor registry data, as well as chart review, to create a comprehensive database for all new head and neck cancer patients at Yale in 2013 and 2014. The patients with oropharyngeal cancers were then isolated and all living patients were called to survey them about long term treatment effects, using a standardized survey. The data gathered was then analyzed using univariate and multivariate analysis.</p>
<p>Results: Only 6 institutions across the country had any publicly available data regarding head and neck patients, and only three of them had information beyond the number of patients seen. The database of head and neck cancer patients at Yale was created successfully, and compiled into outcomes books for each year that presented the relevant data. Analysis of oropharyngeal patients focused on HPV status, insurance type, academic vs. non-academic centers, and distance from radiation treatment site for patients treated with that modality. Many factors were found to be significant on univariate analysis. On multivariate analysis, it was found that HPV positive patients had better outcomes in various functional and patient reported outcomes. It was also found that private practice patients had improved outcomes compared to Medicare patients. Finally, it was also found that recurrence rates were higher for patients that lived over 15 miles away from their treatment site.</p>
<p>Conclusions: There is a paucity of publicly available data regarding head and neck cancer outcomes at NCI designated cancer centers around the country. At Yale, the data showed that standard metrics are in line with national outcomes. The institution can improve significantly in terms of various process metrics, most specifically in terms of having various ancillary staff work with patients who are diagnosed or treated for a head or neck cancer. Analysis of oropharyngeal patients demonstrated that patients with HPV negative cancers need closer monitoring for various functional and patient reported outcomes. It also demonstrated that patients on Medicare need monitoring for various other functional and patient reported metrics. Patients who live further from their treatment sites have higher recurrence rates, indicating that patients who have to travel further might be at higher risk for missing treatment or for receiving adequate follow-up.</p>

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</description>

<author>Ankit Kansal</author>


</item>




<item>
<title>Analysis Of Attitudes Toward Mental Illness Among Medical Professionals In Ibadan, Nigeria</title>
<link>http://elischolar.library.yale.edu/ymtdl/2132</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2132</guid>
<pubDate>Thu, 06 Jul 2017 09:36:50 PDT</pubDate>
<description>
	<![CDATA[
	<p>The authors surveyed attitudes towards mental illness among medical students who had not completed their psychiatry rotation, medical students who had completed their psychiatry rotation, and graduate physicians. Six questions addressed beliefs about the effectiveness of treatments for four specific mental illnesses and two medical illnesses. There were no significant trends in attitudes towards the effectiveness of medication. A self-report questionnaire including 56 dichotomous items was used to compare beliefs about and attitudes towards people with mental illness. Exploratory factor analysis of the items identified four factors: (1) comfort socializing with people with mental illness; (2) non-superstitious beliefs about the causes of mental illness; (3) neighborly feelings towards people with mental illness; and (4) belief that stress and abuse are part of the etiology of mental illness. ANCOVA comparing attitudes among the three groups showed that on three (1, 2, and 4) of the four factors medical students who had completed a rotation in psychiatry had significantly higher scores than the medical students who had not completed a rotation in psychiatry. Graduate physicians scored higher than the medical students who had not completed a rotation in psychiatry in two factors (1 and 4) but showed no differences from students who had completed their psychiatry rotation.  While beliefs about medication effectiveness do not differ between medical trainees and graduate professionals, stigmatizing attitudes towards people with mental illness seem to be most strongly affected by clinical training.</p>

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</description>

<author>Adesuwa Adenike Ighodaro</author>


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<item>
<title>Optimizing Combined Targeted And Immune Melanoma Therapies Using A Mouse Melanoma Model</title>
<link>http://elischolar.library.yale.edu/ymtdl/2131</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2131</guid>
<pubDate>Thu, 06 Jul 2017 09:36:47 PDT</pubDate>
<description>
	<![CDATA[
	<p>Recently, the FDA approved two new therapeutic agents that showed improved survival in patients with metastatic melanoma in phase III clinical trials: ipilimumab is a monoclonal antibody that blocks CTLA-4 to potentiate antitumor immune responses and vemurafenib is a selective inhibitor of the BRAF kinase. However, even with the recent advances in therapy, each individual drug has limitations. Combining different therapies can theoretically lead to improved outcomes. For instance, the chemotherapeutic agent temozolomide increases DNA methylation and cell apoptosis. This may increase tumor antigen release, which could further potentiate the antitumor response of ipilimumab. Performing trials of combination therapies in a mouse model can help us detect effective combination therapies and understand their mechanisms. This study uses a conditional melanoma mouse model based on the Cre-Lox recombination system to lead to the melanocyte-specific expression of activated BRAF, loss of PTEN, and stabilization of β-catenin. The model allows us to grow melanoma driven by mutations relevant to human melanoma in an immune competent setting. Mice were treated with different combinations and schedules of chemotherapeutic agents (decitabine or temozolomide) and immunomodulatory agents (anti-CTLA4 antibody). Preliminary data suggests that the combination of chemotherapeutic agents and immunomodulatory agents may result in improved anti-melanoma responses. Finding an optimal combination and schedule in animal models can eventually be translated into clinical trials for humans.</p>

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</description>

<author>Laura Huang</author>


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<item>
<title>Hemodynamic Parameters Predict Outcomes In Patients Undergoing Biventricular Conversion</title>
<link>http://elischolar.library.yale.edu/ymtdl/2130</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2130</guid>
<pubDate>Thu, 06 Jul 2017 09:36:44 PDT</pubDate>
<description>
	<![CDATA[
	<p>HEMODYNAMIC PARAMETERS PREDICT OUTCOMES IN PATIENTS UNDERGOING BIVENTRICULAR CONVERSION</p>
<p>Melissa A. Herrin and Sitaram M. Emani. Department of Cardiac Surgery, Boston Children’s Hospital, Harvard Medical School, Boston, MA. (Sponsored by James J. Yun, Department of Surgery, Yale University School of Medicine.)</p>
<p>Patients with borderline left heart, hypoplastic left heart syndrome variant (bHLHS) or unbalanced atrioventricular canal (uAVC), who undergo initial single ventricle palliation may be candidates for biventricular (BiV) conversion following left ventricle (LV) recruitment procedures. Our objective was to investigate the association between preoperative parameters and postoperative outcomes in a cohort of patients undergoing BiV conversion. We performed a retrospective review of patients who underwent BiV conversion to determine variables associated with clinical outcomes. Predictor variables included cardiac diagnosis, age and weight, LV dimension, LV end diastolic volume, LV mass, preoperative LV end diastolic pressure (LVEDP), and preoperative left atrial pressure. Primary outcome was a composite of death, heart transplant, or BiV reversal to SVP (reversal). Of 51 patients, 11 experienced primary outcome (22%). Patients with bHLHS were more likely to experience primary outcome than those with uAVC (30% vs. 6%, P = .03). Receiver operating characteristic analysis demonstrated that preoperative LVEDP had good predictive accuracy in classifying patients with and without the primary outcome (area under the curve = 0.757, 95% confidence interval: 0.594 - 0.919, P = .012). The Youden J-index indicated a cutoff of LVEDP ≥ 13 mmHg as optimal for predicting the primary outcome. Multivariable Cox regression demonstrated that LVEDP > 13 mmg was associated with primary outcome, independent of age, weight, gender and diagnosis (adjusted hazard ratio = 4.00,  P = .037). Multivariable Cox regression analysis also demonstrated that elevated postoperative right ventricular pressure (>3/4 systolic blood pressure) was significantly associated with primary outcome (adjusted hazard ratio  =21.75,  P< .001) independent of age, weight, and diagnosis. Elevated preoperative LVEDP is a risk factor for suboptimal postoperative hemodynamics and adverse following BiV conversion after single ventricle palliation.</p>

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</description>

<author>Melissa Anne Herrin</author>


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<item>
<title>Near-Peer Reflective Writing Workshops: Safe Space, Solidarity, Conversation, And Debriefing.</title>
<link>http://elischolar.library.yale.edu/ymtdl/2129</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2129</guid>
<pubDate>Thu, 06 Jul 2017 09:36:40 PDT</pubDate>
<description>
	<![CDATA[
	<p>NEAR-PEER REFLECTIVE WRITING WORKSHOPS: SAFE SPACE, SOLIDARITY, CONVERSATION, AND DEBRIEFING.</p>
<p>Kayleigh Herrick-Reynolds (Sponsored by Anna Reisman). Section of General Medicine, Department of Internal Medicine, Yale University, School of Medicine, New Haven, CT.</p>
<p>Medical students experience challenging situations during the clerkship year, but often lack opportunities to debrief. The near-peer reflective writing workshop at Yale School of Medicine (YSM) is a student-led session that is integrated into the didactic portion of the clerkships. We hypothesized that near-peers can create a safe environment for honest reflection, that this experience can create a rigorous perception of reflection, and that the mixed peer groups in these workshops can increase the sense of community.</p>
<p>Data was collected over one year from students in their clinical clerkships. Facilitators were trained near-peer volunteers who led students through a series of progressively more challenging writing prompts in a 1 hour and fifteen minute session. Open-ended evaluations were distributed after each session, and a final more detailed questionnaire was distributed at the end of the year. Facilitators also completed an end-of-year questionnaire. Open-ended answers were analyzed through an inductive, randomized, and iterative consensus process within a phenomenological framework.</p>
<p>Most students (62%) indicated that they would choose to attend the workshop even if they were not mandatory. Participants and facilitators alike agreed that they should become a standardized part of medical education. Facilitators and participants reported an increased sense of community from these workshops, and they provided a safe space for reflection. Students were surprised by how willing peers were to share their experiences, and they valued having protected time for reflection. The structure of the workshop helped facilitate recall and reflection. The workshops helped students process experiences, and encouraged them to focus more on empathy and emotions in clinical care. Students indicated that they would be more likely to share various challenging topics in a group led by a near-peer rather than a faculty member. Many indicated that this workshop would encourage them to increase reflective practice moving forward.</p>
<p>The YSM near-peer reflective writing workshop had an overwhelmingly positive reception by medical students, and has the potential to mitigate isolation and stress during the clerkship year. It may encourage medical students to change their perception of reflection, and continue to practice it throughout their careers.</p>

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</description>

<author>Kayleigh Herrick-Reynolds</author>


</item>




<item>
<title>Demethylation Therapy As A Novel Treatment For Human Papilloma Virus-Associated Head And Neck Cancer</title>
<link>http://elischolar.library.yale.edu/ymtdl/2128</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2128</guid>
<pubDate>Thu, 06 Jul 2017 09:36:37 PDT</pubDate>
<description>
	<![CDATA[
	<p>5-azacytidine (5-aza) and its structural analog 5-aza-2’-deoxycytidine (decitabine) are demethylating agents currently used to treat myelodysplastic syndrome and acute myeloid leukemia. In addition to demethylating DNA, they are known to cause DNA damage and activate DNA damage response pathways, but our mechanistic understanding of these processes is incomplete. Given the unique epigenetic profile of human papilloma virus-associated (HPV+) head and neck squamous cell carcinoma (HNSCC), we sought to develop demethylation therapy as a novel, targeted treatment for this subset of cancer that has less morbidity than current treatments. We wanted to characterize the DNA damage and describe the mechanism of damage induced by 5-aza in these cells, as well as the cellular response and effect on metastatic potential in cells, xenograft models, and tumors from patients treated in a clinical trial at the Yale Cancer Center. By using pulsed-field gel electrophoresis, we found that demethylation treatment induces DNA double strand break formation exclusively in HPV+ head and neck cancer cells, and that these breaks depend on active transcription, replication, and expression of a known antiviral enzyme, apolipoprotein B mRNA editing enzyme catalytic polypeptide-like 3 (APOBEC3B). Furthermore, we found that demethylation therapy also reactivates p53, downregulates HPV genes, reduces the expression of matrix metalloproteinases, and reduces the metastatic potential in cells, xenograft models, and in patient tumors.</p>

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</description>

<author>Michael Hajek</author>


</item>




<item>
<title>Generic Drug Policy In The U.s. - Impact On Drug Prices And Shortages</title>
<link>http://elischolar.library.yale.edu/ymtdl/2127</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2127</guid>
<pubDate>Thu, 06 Jul 2017 09:36:34 PDT</pubDate>
<description>
	<![CDATA[
	<p>Generic medicines offer a significantly cheaper alternative to brand-name drugs and have become an indispensable means of maintaining patient access and adherence to treatments. In recent years, as a result of monopolistic and oligopolistic conditions, generic drugs have begun to increase in price, sometimes exorbitantly. The competitiveness of drug markets with respect to the number of generic manufacturers and the implications for drug prices and shortages have not been systematically studied.</p>
<p>Two main analyses are presented in this study. First, using publicly available information, the timing of generic drug approvals and the total number of generic manufacturers for all small-molecule drugs approved between 1984 and 2015 were characterized. Second, this study investigated the impact on drug prices and shortages of a specific FDA regulation, called the Unapproved Drugs Initiative.</p>
<p>The first analysis demonstrates that among 417 FDA-approved drugs, 210 were eligible for generic competition, and 77 (37%) had three or fewer generic drugs approved: 16 had three generic approvals, 9 had two, 16 had one, and 36 had zero. Among the 174 drugs with at least one generic approval, the median number of generic approvals was 7 (IQR, 4-12). Generic approvals were fewer among orphan-designated drugs when compared with non-orphan-designated drugs (18 of 33 [55%] vs. 156 of 177 [88%]; p<0.001).</p>
<p>The second analysis found that since 2006, 34 unapproved prescription drugs had been addressed by the Unapproved Drugs Initiative (UDI). Nearly 90% of those that went on to receive FDA approval were supported by literature reviews or bioequivalence studies, not new clinical trials. In addition, once targeted by the UDI, drugs experienced price and shortage increases of nearly 40% and 74%, respectively.</p>
<p>Overall, more than one-third of drugs approved after 1984 and without protection from patents have three or fewer generic competitors, making them vulnerable to price increases. By unintentionally reducing the number of manufacturers for specific drugs, the FDA’s Unapproved Drugs Initiative led to higher prices and more frequent and longer shortages, highlighting the importance of robust generic competition.</p>
<p>In conclusion, insufficient pharmaceutical competition has created an environment enabling price increases of old, off-patent generic drugs, such as Daraprim and Epipen. This study highlights that a substantial number of additional, similar drugs is vulnerable to such price increases for a variety of reasons. Future efforts to reform generic drug policy should seek to boost generic competition, more carefully regulate drug prices, and address brand-name pharmaceutical companies’ strategies to obstruct the ability of generic manufacturers to compete. In addition, physicians and patients should be bettered educated on the fact that a lack of generic competitors may mean that simply prescribing generic drugs will not make medications affordable for patients; alternative options may have to be explored. Such efforts are essential in ensuring continued patient access to affordable drugs.</p>

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</description>

<author>Ravi Gupta</author>


</item>




<item>
<title>Design And Implementation Of A Clinical Waveform Analysis Tool</title>
<link>http://elischolar.library.yale.edu/ymtdl/2126</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2126</guid>
<pubDate>Thu, 06 Jul 2017 09:36:30 PDT</pubDate>
<description>
	<![CDATA[
	<p>There is a shortage of commercial software specifically designed for physiological waveform analysis using data from clinical monitors. The purpose of this thesis project is to address that shortage by creating a cross-platform, open-source, case-based physiologic waveform analysis tool designed specifically for clinicians. The software is written in Python and features an easy to use interface with a stepwise preprocessing, analysis, and output pipeline. It uses a custom binary file format for waveform storage and is able to read and store the output data from clinical monitor recording software used at Yale-New Haven Hospital. While it has a current focus on cardiac event based photoplethysmographic (PPG) contour analysis, it can easily be extended to analyze other waveform types. All of the code involved in the project can be found in the Appendix.</p>

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</description>

<author>Paul Guillod</author>


</item>




<item>
<title>Engineering A Retinal Progenitor Cell Graft For Transplantation Studies In The Rd10 Mouse Model</title>
<link>http://elischolar.library.yale.edu/ymtdl/2125</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2125</guid>
<pubDate>Thu, 06 Jul 2017 09:36:27 PDT</pubDate>
<description>
	<![CDATA[
	<p>In later stages of retinal degenerative diseases such as age-related macular degeneration (AMD) and retinitis pigmentosa stem cell therapy can be the only viable treatment option due to the loss of photoreceptor and RPE cells. Differentiation of embryonic stem cells (ESCs) towards the desired lineage explicitly requires a microenvironment that mimics the natural tissue that it is intended to regenerate. Developing a planar 3D retinal graft derived from ESCs can be transplanted to treat various retinal degeneration diseases. Our aim was to explore the differentiation and growth of ESCs on a gelatinous scaffold in order to transplant into a retinitis pigmentosa mouse model (RD10). Our aim was to evaluate the transplanted graft for host inflammatory response, stem cell integration, cell survival, and tumorigenesis. The transplanted graft was also compared to injection of a homogenous photoreceptor cell population into the subretinal space of the RD10 mouse model. A biocompatible gelatinous scaffold was developed in order to support the differentiation of a multilayered retinal structure. ESCs were seeded onto the scaffold for proliferation and differentiation in the vicinity of retinal pigment epithelium cells. Cultures were analyzed for differentiation by qRT-PCR and immunofluorescence confocal microscopy. The graft was transplanted into the subretinal space to examine biocompatibility and retinal progenitor cell integration into the native mouse retina. ESCs migrated through the 60μm thickness of the scaffold and differentiated into the retinal progenitor cells as evidenced by qRT-PCR and immunohistochesmistry. In-vivo testing analyzed on 1st, 3rd and 6th week showed scaffold degradation by the 6th week. The gelatinous scaffold supported the differentiation of ESCs to RPCs and minimal inflammatory response was seen post transplantation.</p>

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</description>

<author>Maryam Ghiassi</author>


</item>




<item>
<title>Frontal Lobe Seizures: Intracranial Markers Of Loss Of Consciousness</title>
<link>http://elischolar.library.yale.edu/ymtdl/2124</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2124</guid>
<pubDate>Thu, 06 Jul 2017 09:36:24 PDT</pubDate>
<description>
	<![CDATA[
	<p>Loss of consciousness is an important morbidity associated with epileptic seizures, and understanding how altered consciousness occurs could have impact on future therapies. Consciousness includes multiple levels of input and output that maintain alertness, attentiveness, and awareness of both self and the environment. Previous work using SPECT imaging and intracranial EEG analysis of temporal lobe seizures has supported the network inhibition hypothesis. This hypothesis states that impaired consciousness in temporal lobe epilepsy involves activation of the temporal lobe leading to abnormal activity in the thalamus and brainstem subcortical arousal systems. These changes lead to the depressed function in the frontal and parietal association cortices and impaired consciousness. Research on the mechanisms of loss of consciousness in frontal lobe epilepsy is not well defined, though loss of consciousness in frontal lobe seizures may be associated with widespread low voltage fast activity. To further investigate this, this study analyzes 26 frontal lobe seizures from 14 patients that had undergone intracranial EEG monitoring. Based on this data analysis, there is an increase of low voltage fast activity associated with frontal lobe seizures exhibiting loss of consciousness. In addition, seizures with impaired consciousness exhibit higher amounts of epileptic activity based on EEG ictal patterns, and more post ictal slowing than seizures with maintained consciousness.  These findings suggest a novel mechanism for loss of consciousness during frontal lobe seizures which may differ from temporal lobe seizures, and could guide improved treatments for frontal lobe epilepsy.</p>

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</description>

<author>Rahiwa Gebre</author>


</item>




<item>
<title>Indications For Invasive Mediastinal Staging In Patients With Early Non-Small Cell Lung Cancer Staged With Pet-Ct</title>
<link>http://elischolar.library.yale.edu/ymtdl/2123</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2123</guid>
<pubDate>Thu, 06 Jul 2017 09:36:20 PDT</pubDate>
<description>
	<![CDATA[
	<p>ABSTRACT</p>
<p>Purpose:  Little data exists to guide the appropriate use of invasive mediastinal staging in patients with clinically node-negative NSCLC staged by PET-CT. We examined a large cohort of patients with clinical stage I NSCLC determined by PET-CT to determine which patients benefit from invasive staging.</p>
<p>Materials/Methods:  We identified consecutive clinical T1-2N0 NSCLC patients being evaluated for curative-intent therapy between 2011 and 2015.  None had evidence of nodal disease by PET-CT; the endpoint was pathologic confirmation of occult N2 disease.  Tumor size, location, histology, SUVmax, and radiographic appearance were evaluated as determinants of occult N2 disease. Two group comparisons of continuous variables were done with independent t-tests and categorical variables were compared with    or Fisher’s exact test.</p>
<p>Results: In 284 patients with PET-CT-staged clinical T1-2N0 disease, the prevalence of occult N2 metastases was 7.0%.  The negative predictive value of PET-CT was 92.9% and the negative predictive value of mediastinoscopy/EBUS was 96.3%.</p>
<p>T2 tumors were more likely to have occult N2 disease than T1 tumors (11.8% v 3.6% p=0.009).  Pure solid tumors had greater involvement of N2 nodes than tumors with any ground glass component (12.6% v 1.5%, p=0.001). 17.5% of  central tumor cases were found to have occult N2 metastases while 4.4% of patients with peripheral tumors (P<0.001). 33.3% of patients with solid central T2 tumors had occult N2 metastases whereas 3.6% of patients with peripheral T1 tumors with a ground glass component and 1.2% of patients with peripheral T1 solid tumors had N2 metastases.</p>
<p>Conclusions: Invasive mediastinal staging should be strongly encouraged in central tumors and solid T2 tumors because the risk of occult nodal involvement is greater than 10% in these cohorts. However, for patients with peripheral T1 tumors, the yield of invasive staging after a negative PET-CT is very low and invasive staging may not be warranted.</p>

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</description>

<author>Sarah Gao Gao</author>


</item>




<item>
<title>Exploring The Role Of Dopamine Circuits In Eating Behavior</title>
<link>http://elischolar.library.yale.edu/ymtdl/2122</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2122</guid>
<pubDate>Thu, 06 Jul 2017 09:36:17 PDT</pubDate>
<description>
	<![CDATA[
	<p>In its simplest terms, obesity is a disease of exaggerated food intake.  While current treatment of obesity focuses on changing behavior, few successful models of behavior modification have been developed.  Even those treatments that are successful in the short-term, have failed to demonstrate lasting effect.  The problem of over-eating, then, needs to be studied in terms of basic motivational programs that are encoded by the brain’s reward system. Understanding the way in which reward system activity directs eating behavior will allow more sophisticated and efficacious treatment options in the future. Several studies have focused on the nucleus accumbens (NAc) as an important regulator of motivation and reward seeking.   There are two primary populations of neurons in the NAc at work in modulating motivation and reward-related effort.  Several studies have given insight into what each of these may be doing to direct food intake.  The present study expands on this body of knowledge using a novel technique to accomplish cell-type-specific assessment of neural activity during feeding behavior.</p>

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</description>

<author>Kara Elizabeth Furman</author>


</item>




<item>
<title>National Trends In Retinopathy Of Prematurity Incidence And Care Over Sixteen Years</title>
<link>http://elischolar.library.yale.edu/ymtdl/2121</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2121</guid>
<pubDate>Thu, 06 Jul 2017 09:36:13 PDT</pubDate>
<description>
	<![CDATA[
	<p>Modern technological developments in neonatal care have heralded changing rates of Retinopathy of Prematurity (ROP) and attitudes toward surgical treatments. In this study, our purpose was twofold. We examined: 1) ROP incidence in the United States and trends in patient and treating hospital characteristics over the last 16 years; 2) usage of the 5 most prevalent surgical treatments over time. Using a national database, we queried 53,874 infants with an ICD-9 diagnosis of ROP between 1/1/1998-12/31/2013. Birth weight, gestational age, hospital charges, length of stay, race, primary payor, and gender were assessed. Incidence was determined among infants with prolonged hospital stays of ≥28 days or all infants born prematurely (<37weeks). Furthermore, the rate of usage of laser, vitrectomy, scleral buckle, diathermy, cryotherapy and their relationship with birth weight, gestational age, ROP stage and age at the time of procedure were assessed. Incidence in infants with prolonged hospital stays increased significantly from 15.9% to 20.5% (P=0.0088) but there was no significant change among all infants born prematurely (P=0.1177). over 2008-2013, rates of severe (vision-threatening) disease parallel those in other developed countries: 14% percent of ROP patients had severe disease (stages ≥3). In 2013, 5% of patients received any procedure, compared to 22% in 1998. Surgical rates varied inversely with gestational age and birth weight. Laser replaced vitrectomy as the most common procedure. Laser was performed earliest and vitrectomy and scleral buckle the latest (mean 84 vs. 135, 136 days of age, respectively). About one-fifth of patients with scleral buckle or cryotherapy also had laser in the same stay. Vitrectomy was performed along with one-quarter of scleral buckle patients and one-third of cryotherapy patients, and half of diathermy patients in the same stay. This study is the largest known survey of ROP infants. Total charges for stays in rural hospitals were almost quadruple those in urban ones ($205,202 vs. $54,601) and length of stay almost double in rural hospitals (50 vs. 26 days, respectively). Rates of severe ROP in the US (14%) parallel those in other developed countries. Declining overall surgical rates may reflect improved modern medical management of ROP and prematurity in general. Declining vitrectomy rates over this period likely reflect increasing success and acceptance of laser treatments, which have better visual outcomes. As costs and length of stay increase, large, urban hospitals treat more ROP than ever, and these centers are highly cost efficient compared to rural counterparts.</p>

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</description>

<author>Paula Feng</author>


</item>




<item>
<title>Parental Factors Associated With The Request For Resuscitation For Infants Born At Periviability</title>
<link>http://elischolar.library.yale.edu/ymtdl/2120</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2120</guid>
<pubDate>Thu, 06 Jul 2017 09:36:10 PDT</pubDate>
<description>
	<![CDATA[
	<p>The purpose of this study is to determine factors associated with parental request for aggressive resuscitation for infants born at borderline viability, the period between 22 0/7 and 24 6/7 weeks of gestation. Between 2013 and 2016, 81 women were admitted to Yale New Haven Hospital (YNHH) for a potential delivery in this critical period. Eighty-four percent of patients elected aggressive resuscitation for their newborn and 16% chose comfort care only. Using bivariate analysis to evaluate statistical significance, 5 of 19 possible variables were included in our logistic regression model. This model demonstrated higher likelihood of a request for resuscitation in patients who did not receive steroids or had multiple gestation. The odds of the request for resuscitation is threefold greater with each increase in gestational age by one day.</p>
<p>In a secondary study, a 15-item survey was administered to the current YNHH Neonatal-Perinatal fellows to evaluate the nature of the prenatal consult and the fellow’s recommendations for management of infants born in the gray zone. All five respondents recommend against resuscitation at 22 weeks, 80% recommend full resuscitation at 24 weeks and most prefer a case-by-case consideration at 23 weeks.</p>
<p>These findings stress the importance of frequent re-evaluation of patient choice for newborn management in borderline viable births as this may change with each additional day of pregnancy. Our study has important implications for the decision-making process between expectant parents, neonatologists, and obstetricians.</p>

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</description>

<author>Abiola Deborah Femi-Abodunde</author>


</item>




<item>
<title>Using Three-Dimensional Bioprinting To Create Vascular Grafts: A Pilot Study</title>
<link>http://elischolar.library.yale.edu/ymtdl/2119</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2119</guid>
<pubDate>Thu, 06 Jul 2017 09:36:06 PDT</pubDate>
<description>
	<![CDATA[
	<p>Our hypothesis was that vascular grafts could be created using three-dimensional (3D) bioprinting technology. Our goal was to create vascular grafts that could be implanted as a patch into a rat vessel without rupture or occlusion. We utilized printing technology from Organovo to 3D print vascular graft material consisting of rat smooth muscle cells, rat fibroblast cells, gelatin and a hydrogel mixture. Our vascular grafts were printed as tubular structures with an internal diameter of 3mm. After a period of maturation (7-12 days), a segment of the print was cut out and used to repair an arteriotomy or venotomy created in rat aorta or inferior vena cava, respectively. We found that the animals survived and that the grafts remained in place without evidence of rupture or stenosis over the course of 30 days. Animals were sacrificed 7 days or 30 days after implantation to evaluate how the graft changes over time; histological examinations of the patched vessels suggest that the patch adapts to the host site and does not induce a major inflammatory response. Although more work is needed to further characterize the behavior of these patches in vivo, our results demonstrate that 3D bioprinting is a viable option for creating vascular patch grafts.</p>

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</description>

<author>Gulus Emre</author>


</item>




<item>
<title>Designing Multi-Layered Nanoparticles For Combination Gene And Drug Cancer Therapy.</title>
<link>http://elischolar.library.yale.edu/ymtdl/2118</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2118</guid>
<pubDate>Thu, 06 Jul 2017 09:36:02 PDT</pubDate>
<description>
	<![CDATA[
	<p>Cancer continues to be a highly prevalent and lethal disease, despite significant advances in understanding tumor biology and developing new chemotherapies. Major obstacles in cancer chemotherapy are drug resistance and systemic toxicities. Potential strategies for addressing these problems include delivering combination therapies to overcome drug resistance, and utilizing synergistic agents to minimize dosing and subsequently drug toxicity. In turn, delivery can also be optimized to target the tumor site and consequently minimize systemic side effects. Polymer nanocarriers are gaining interest as vehicles for cancer therapeutics for their abilities to not only deliver multiple agents, but also target the tumor itself. Our goal is to design multi-layered polymer nanoparticles (MLNPs) for efficient delivery of small molecules and genetic material towards synergistically inhibiting tumor growth. The MLNPs were first optimized for transfection in vitro through delivery of plasmids encoding for luciferase (pLuc) and green fluorescent protein (pGFP). The particles were then evaluated for effective delivery of both a candidate small molecule, camptothecin (CPT), and a plasmid encoding for TNF related apoptosis inducing ligand (pTRAIL) (CT MLNPs). Co-delivery of CPT and pTRAIL via CT MLNPs were then evaluated for growth inhibition of brain, colorectal, and breast cancer cells in vitro. MLNPs were approximately 116 nm in diameter. They were able to delivery approximately 575 ng of plasmid per mg of particle, and between 0.1 mg to 0.01 µg of CPT per mg of particle. MLNPs were non-toxic, and human embryonic kidney cells (293T) transfected with pLuc loaded MLNPs expressed comparable amounts of luciferase as cells transfected with the gold standard lipid formulation, Lipofectamine 2000. Thirty-seven percent of transfected 293T cells expressed GFP 72 h after transfection. Studies on tumor death kinetics related to CPT exposure and pTRAIL transfection suggested that simultaneous transfection and drug exposure provided the greatest inhibition of cell growth. MLNPs were able to provide the optimal timing for delivery of both agents. Synergy analysis of co-delivering CPT and pTRAIL via CT MLNPs, using the Chou-Talalay method, provided a combination index at 50% inhibition ranging between 0.31 and 0.53 for all cell lines. These CI values indicate a synergistic interaction between the two agents. For obtaining a 50% effect level, co-delivery with MLNPs resulted in providing 3.14-7.38 fold reduction in CPT and 4.66 to 6.09 fold reduction in pTRAIL. These initial results support our hypothesis that MLNPs can deliver both small molecule and genetic agents towards synergistically inhibiting tumor growth.</p>

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</description>

<author>Asiri Saumya Ediriwickrema</author>


</item>




<item>
<title>Community-Engaged Research For The Enhancement Of Diabetes Prevention Interventions Among Hispanic Americans: A Systematic Review</title>
<link>http://elischolar.library.yale.edu/ymtdl/2117</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2117</guid>
<pubDate>Thu, 06 Jul 2017 09:35:59 PDT</pubDate>
<description>
	<![CDATA[
	<p>Hispanic Americans are at a high risk for diabetes, prompting a need for targeted interventions. Community-engaged research (CEnR) methods are recommended in efforts to address health disparities in minority populations. However, it is unclear to what extent researchers in this area use CEnR framework to guide their work. In this exploratory evaluation, we seek to assess the relevant published literature for the outcomes of diabetes prevention programs among at-risk Hispanic Americans and the presence of CEnR components in these programs. We further explore whether the number of CEnR components is associated with intervention outcomes including weight change, intervention participant engagement, and study retention. We searched MEDLINE, EMBASE, CINAHL, and LILACS for relevant articles from 2002 to 2016 in English language. Two members of the research team screened all articles. Seven studies (5 RCTs, 2 prospective trials) met eligibility criteria. Significant improvements were reported for several measures of body composition including weight, BMI, and waist circumference. Small or insignificant changes were reported for measures of glucose control. Mixed results were found for psychosocial and behavioral outcomes. The CEnR elements most often utilized were implementation in a community setting (100%), and collaborating with community members in partnerships and advisory committees (86%), in cultural intervention tailoring (86%) and in program delivery (71%). Studies were generally limited in several key areas of CEnR including data analysis (14%), dissemination of results (14%), choosing a research focus (14%), and data collection (0%). However, we found no statistical relationship between our CeNR composite variable and weight change (R2=0.0), insufficient data to report on CeNR and study participation, and a moderate negative relationship between CeNR and retention (R2=-0.53). However, further research is needed to confirm these results. This paper demonstrates the variability of both the use and description of CEnR components within the literature. These findings support the need for consensus guidelines on best practices for reporting of CEnR components. Once established, further research can investigate the association between CEnR and research process and outcome measures.</p>

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</description>

<author>Alexander Domingo</author>


</item>




<item>
<title>Site 1 Sodium Channel Blockers And Dexmedetomidine As A Prolonged Duration Topical Corneal Anesthetic</title>
<link>http://elischolar.library.yale.edu/ymtdl/2116</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2116</guid>
<pubDate>Thu, 06 Jul 2017 09:35:54 PDT</pubDate>
<description>
	<![CDATA[
	<p>Title: SITE 1 SODIUM CHANNEL BLOCKERS AND DEXMEDETOMIDINE AS A PROLONGED DURATION TOPICAL CORNEAL ANESTHETIC.  Jenny C. Dohlman, James B. McAlvin, Changyou Zhan, Paraskevi E. Kolovou, Borja Salvador-Culla, and Daniel S. Kohane.  Laboratory for Biomaterials and Drug Delivery, Department of Anesthesiology, Division of Critical Care Medicine, Harvard Medical School, Boston Children’s Hospital, Boston, MA.  (Sponsored by Jessica H. Chow, Department of Ophthalmology and Visual Sciences, Yale University School of Medicine).</p>
<p>Background: Conventional amino-ester and amino-amide local anesthetics used to treat ocular pain from corneal injury and ophthalmic surgery, such as the commonly used proparacaine, require repeated administration and may delay corneal healing with long-term use.  An ocular anesthetic formulation with extended effect and minimal toxicity is needed.  Here, we studied the corneal anesthetic effect of two site 1 sodium channel blockers, tetrodotoxin (TTX) and saxitoxin (STX), individually or in combination with 2-adrenergic receptor agonists (dexmedetomidine and clonidine), and compared them with proparacaine.  Finally, we characterized the biocompatibility of each formulation through in vitro cytotoxicity studies and studied the effect of test solutions on corneal healing.</p>
<p>Methods: Solutions of TTX  dexmedetomidine, TTX  clonidine, STX  dexmedetomidine, dexmedetomidine or proparacaine were topically applied to the rat cornea.  The duration of corneal anesthesia was measured by recording the blink response to probing of the cornea using a Cochet-Bonnet esthesiometer.  Cytotoxicity from anesthetic solutions was measured in vitro using human corneal limbal epithelial cells.  The effect on corneal healing was measured in an in vivo rat model after corneal debridement followed by repeated drug administration.</p>
<p>Results: Addition of dexmedetomidine to TTX or STX significantly prolonged the duration of corneal anesthesia beyond that of either drug alone, whereas clonidine did not.  Topical co-administration of either TTX or STX with dexmedetomidine resulted in two to three times longer corneal anesthesia than did proparacaine.  Site 1 sodium channel blocker and dexmedetomidine formulations were not cytotoxic and corneal healing was not delayed significantly by any of the tested formulations.</p>
<p>Conclusions: Topical co-administration of site 1 sodium channel blockers with dexmedetomidine results in prolonged duration corneal anesthesia without delaying corneal wound healing.  Such formulations may be useful for the management of acute surgical and nonsurgical corneal pain.</p>

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</description>

<author>Jenny Dohlman</author>


</item>




<item>
<title>Neurological Outcomes Of Craniosynostosis</title>
<link>http://elischolar.library.yale.edu/ymtdl/2115</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2115</guid>
<pubDate>Thu, 06 Jul 2017 09:35:49 PDT</pubDate>
<description>
	<![CDATA[
	<p>The purpose of this investigation was to examine the impact of treatment factors (type of surgery, timing of surgery, and reoperation influence) on neurocognitive outcomes of nonsyndromic sagittal craniosynostosis (NSC). We also wished to examine the impact of skull remodeling surgery on language processing in infants with NSC. We hypothesized that: a) there would be a difference between whole-vault cranioplasty and isolated strip craniectomy related to neurocognitive outcomes, b) age at surgery would be associated with a difference in neurocognitive outcomes, with and without reoperation, and c) skull remodeling surgery would influence language processing in infants with NSC. Seventy-three school-age children with NSC (44 whole-vault cranioplasty, 29 isolated strip craniectomy) were administered a battery of standardized neuropsychological measures (Wechsler Abbreviated Scale of Intelligence, Wechsler Fundamentals, Beery-Buktenica Visual Motor Integration, Behavior Assessment System of Children, Behavior Rating Inventory of Executive Function) to assess their neurocognitive outcomes for comparison of surgery type, reoperation, and timing. 39 infants (12 NSC, 27 control) underwent EEG recordings while listening to a non-native phonemic discrimination task for evaluation of a language processing component, the mismatch negativity (MMN) event-related potential (ERP). Comparing surgery type, in participants who were operated on at <6 months age, whole-vault patients performed higher on verbal IQ, word reading, spelling, and visuomotor integration compared to isolated strip patients (p<0.05 for all). Whole-vault cranioplasty patients demonstrated lower incidence of word reading-related learning disability (p<0.05). Isolated strip patients were rated better on parent-reported measures of executive function (p<0.05). Regarding reoperations after whole-vault cranioplasty, eleven out of the 41 whole-vault patients, for which reoperation data was available, underwent a reoperation (27%); 9 out of the 11 reoperations were minor revisions while 2 reoperations were cranioplasties. Reoperation rate was not statistically different between patients who had early surgery (at age <6 months) versus late surgery (at age >6 months) (p>0.05). Non-reoperated patients did not perform statistically better than reoperated patients on any outcome measure of neurocognitive function (p>0.05 for all assessments). Comparing reoperated early surgery patients with non-reoperated late surgery patients, reoperated early surgery patients scored significantly higher on full-scale IQ, verbal IQ, word reading, reading comprehension, spelling, numerical operations, and visuomotor integration, and had fewer indicators of suspected learning disabilities compared to non-reoperated late surgery patients (p<0.05 for all). Regarding language processing in infancy, MMN amplitude was attenuated in magnitude in the infants with NSC prior to surgery compared to controls (p=.047). After surgery, infants with NSC showed no significant difference in MMN from controls (p=.344). The increase in MMN amplitude from preoperatively to postoperatively in the infants with NSC was at a trend level (p=.059). We concluded that whole-vault cranioplasty for NSC is associated with better neurocognitive outcomes than isolated strip craniectomy. Reoperation was not associated with worse neurocognitive outcome, and reoperated early surgery patients attained better neurocognitive outcomes compared with non-reoperated late surgery patients. Infants with NSC demonstrated atypical neural response to language preoperatively, and whole-vault cranioplasty is associated with normalization of language processing in infants with NSC.</p>

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</description>

<author>Carolyn Chuang</author>


</item>




<item>
<title>A Hyperacuity Ipad App Screens For Choroidal Neovascularization In Age-Related Macular Degeneration</title>
<link>http://elischolar.library.yale.edu/ymtdl/2114</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2114</guid>
<pubDate>Thu, 06 Jul 2017 09:35:46 PDT</pubDate>
<description>
	<![CDATA[
	<p>Age-Related Macular Degeneration (AMD) is the leading cause of irreversible blindness in the United States, and can be managed with intravitreal anti-VEGF injections. However, delay of treatment by even a few weeks can lead to decreased visual outcomes. Patients should monitor vision at home to detect choroidal neovascularization as early as possible. The objective of this study is to investigate the potential for the Hyperacuity (HAC) exam app as a screen for progression of treatable disease in exudative AMD. Specifically, the study aims to determine the sensitivity and specificity of the HAC exam app for detecting when the spectral-domain optical coherence tomography (SD-OCT) has pathology concerning for choroidal neovascularization. A secondary aim is to determine whether the patient population of AMD is capable of using the HAC exam app. A cross-sectional single-center study was performed with 33 subjects. Consent was obtained, and subjects were trained and then tested with the HAC exam app. After the study, subjects were asked about the usability of the HAC exam app. A masked retinal subspecialist then graded the SD-OCT to determine which subject eyes required treatment. Further data about the patient visit was obtained through chart review. Subject eyes were each considered a separate data point, and classified as either non-exudative, exudative without requiring immediate treatment (-tx), and exudative requiring immediate treatment (+tx). The HAC exam app was shown to have 92.3% sensitivity and 61.50% specificity in distinguishing between subjects who required treatment and did not require treatment. Age, laterality of the eye, presence of a cataract, and central thickness of the macula on OCT were found to have no correlation with the HAC score. This study shows that the HAC exam app is successful at detecting eyes which require treatment and is correlated with pathology observed on the OCT while not being significantly affected by age or cataracts. The researcher believes that the HAC exam app has strong potential for screening choroidal neovascularization in AMD.</p>

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</description>

<author>Jessica Chen</author>


</item>




<item>
<title>Cutaneous Squamous Cell Carcinomas In Solid Organ Transplant Recipients: A Single-Center Experience</title>
<link>http://elischolar.library.yale.edu/ymtdl/2113</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2113</guid>
<pubDate>Thu, 06 Jul 2017 09:35:42 PDT</pubDate>
<description>
	<![CDATA[
	<p>CUTANEOUS SQUAMOUS CELL CARCINOMA IN SOLID ORGAN TRANSPLANT RECIPIENTS: A SINGLE-CENTER EXPERIENCE</p>
<p>Joyce Y Cheng, Fang-yong Li, Christine J Ko, Oscar R Colegio. Department of Dermatology, Yale School of Medicine, New Haven, CT</p>
<p>Solid organ transplant recipients (SOTR) have an approximately 100-fold increased risk of developing cutaneous squamous cell carcinoma (SCC). These SCCs may behave more aggressively than SCCs developing in non-immunosuppressed individuals. The purpose of this study was to gather more data regarding aggressive behavior of SCCs in immunosuppressed SOTRs compared with SCCs occurring in an immunocompetent control group. An 8-year retrospective observational cohort study was conducted to compare the demographics, care received by, and outcomes of 98 adult SOTR and immunocompetent patients with at least one histopathologically confirmed SCC. The two groups were statistically comparable with regards to demographics, patient care, follow-up time, and numbers of skin lesions they developed, though the SOTR group had significantly higher annual visit frequency (4 office visits per patient per year vs. 3, p = 0.025) and annual biopsy rates (6 biopsies per patient per year vs. 5, p = 0.039). In this setting, the SCCs developed by SOTRs did not appear to be significantly more aggressive than those in the immunocompetent control group. Our SOTRs did not develop significantly thicker tumors than the immunocompetent controls. One SOTR developed an SCC with perineural invasion, two SOTRs had regional metastasis, and one SOTR had nodal metastasis. An increased risk of carcinogenesis with increasing cumulative years of immunosuppression was surprisingly not observed among the SOTRs. SOTRs had a 90% greater risk of developing SCCs in the head and neck region compared with the immunocompetent group (RR=1.89, 95% CI 1.04-1.37). Taken together, our findings suggest that the drastically increased risk of SCCs in SOTRs and potential for aggressive behavior may be successfully managed to a level comparable to that in high-risk immunocompetent individuals with close adherence to current dermatologic surveillance recommendations for SOTRs and a marginally lower threshold for biopsy of suspicious lesions.</p>

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</description>

<author>Joyce Y. Cheng</author>


</item>




<item>
<title>The Impact Of Telemedicine On Teamwork And Communication, Workload, And Clinical Performance: A Randomized Controlled Trial</title>
<link>http://elischolar.library.yale.edu/ymtdl/2112</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2112</guid>
<pubDate>Thu, 06 Jul 2017 09:35:38 PDT</pubDate>
<description>
	<![CDATA[
	<p>Telemedicine can be used to provide specialty care to critically ill patients in rural and community hospital settings.  However, the effects of this technology on quality of care are unclear.  The objectives of this study were to evaluate the impact of a telepresent team leader on teamwork and communication, workload, and quality of care during a simulated pediatric resuscitation, and to explore provider perspectives on the use of telemedicine during resuscitations.</p>
<p>Twenty standardized teams (lead MD + bedside MD + two confederate clinical team members) were randomized to have a telepresent or an in-person leader.  Telepresent leaders were connected via videoconference from a remote location and displayed on a screen at the bedside.  All teams participated in a standardized, pre-programmed 20-minute simulated resuscitation with a scripted parent actor present.  Simulations were video recorded and scored on teamwork and communication as well as clinical performance metrics using the validated STAT instrument. After each case, team members completed demographic, workload (NASA rTLX), and teamwork and communication (TeamMonitor) surveys. Post-simulation debriefings were scripted to collect qualitative data from participants regarding utility, effectiveness, and acceptability of telepresence.</p>
<p>There was no difference in STAT teamwork and communication scores (73 v 66; p=0.118), TeamMonitor scores (91 v 94; p=0.251), or teamwork and communication global rating scores (91 v 77; p=0.143).  There was no difference in rTLX workload scores compared between team leaders (51 v 55; p=0.983) or between junior team members (44 v 59; p=0.123). Similarly, no difference was found in STAT clinical performance scores (72 v 64; p=0.168) or in time-to-defibrillation (238 sec v 253 sec; p=0.762).</p>
<p>Participating providers shared perspectives on the use of telepresence during resuscitation and expressed varying levels of comfort using the modality.  Providers also highlighted strategies for the effective use of telepresence in the acute care setting, including enhanced verbal communication, role delineation, and mutual trust in clinical acumen of each provider involved.</p>
<p>Telepresence did not significantly impact teamwork and communication, workload, or clinical performance.  Participating providers shared perspectives on the impacts of telepresence as well as strategies for effective use of telepresence in the acute care setting.  Together, these data may inform future implementation of telepresence technology in emergency settings.</p>

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</description>

<author>Lucas Christopher Butler</author>


</item>




<item>
<title>Evaluating The Utility Of Spect/ct Imaging Of Angiosome Perfusion In Diabetic Patients With Critical Limb Ischemia</title>
<link>http://elischolar.library.yale.edu/ymtdl/2111</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2111</guid>
<pubDate>Thu, 06 Jul 2017 09:35:34 PDT</pubDate>
<description>
	<![CDATA[
	<p>EVALUATING THE UTILITY OF SPECT/CT IMAGING OF ANGIOSOME PERFUSION IN DIABETIC PATIENTS WITH CRITICAL LIMB ISCHEMIA.</p>
<p>Jessica L. Buckley, Albert J. Sinusas, Mitchel R. Stacy. Section of Cardiovascular Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT.</p>
<p>Impaired lower extremity perfusion is a hallmark of peripheral arterial disease (PAD) and is particularly problematic in diabetic patients, who suffer from high rates of PAD, ulceration, and lower extremity amputation. The ability to non-invasively detect deficits in microvascular perfusion within vascular territories, or angiosomes, of the feet may provide information related to tissue viability and guide therapeutic interventions. In this study, we sought to apply single photon emission computed tomography (SPECT)/CT imaging to quantify volumetric microvascular perfusion within specific angiosomes containing non-healing foot ulcers in diabetic patients with critical limb ischemia (CLI). Additionally, we sought to assess the value of SPECT/CT perfusion imaging for predicting limb salvage in CLI patients undergoing lower extremity endovascular revascularization.</p>
<p>Forty-one diabetic patients (mean age, 66±12 yrs) with non-healing ulcers and nine healthy control subjects (mean age, 50±10 yrs) underwent SPECT/CT imaging of the feet following a resting injection of technetium-99m (99mTc)-tetrofosmin (dose, 550.6 ± 37 Mbq). CT images of diabetic feet were segmented into five angiosomes and used for quantifying relative radiotracer uptake, expressed as standardized uptake values (SUVs). SUVs were assessed for each CLI patient in the angiosome containing the non-healing ulcers, while average whole foot perfusion was assessed for healthy control subjects. Percent change in SPECT SUVs of ulcerated angiosomes was quantified following endovascular revascularization in patients, and 3-, 6-, and 12-month limb salvage outcomes were assessed.</p>
<p>SPECT/CT imaging allowed for visualization of perfusion deficits under resting conditions. 99mTc-tetrofosmin SPECT/CT imaging of angiosome foot perfusion demonstrated a significant difference in baseline perfusion values (SUVs) between diabetic patients with CLI and healthy control subjects (p = 0.02). Analysis of baseline SPECT/CT imaging and ankle-brachial index (ABI) measurements in CLI patients and healthy control subjects demonstrated a significant and positive relationship between SPECT/CT angiosome perfusion and ABI (p = 0.01; r = 0.41). Serial evaluation of relative changes in SPECT angiosome foot perfusion following revascularization revealed significant quantitative changes in perfusion after treatment, whereas ABI measurements did not demonstrate significant changes after revascularization. Changes in SPECT/CT-derived angiosome perfusion significantly differed between patients with and patients without amputation in the 3 (p = 0.01), 6 (p = 0.03), and 12 (p = 0.03) months following revascularization.</p>
<p>SPECT/CT imaging provides a useful non-invasive tool for evaluating microvascular perfusion within specific angiosomes of the foot under resting conditions. SPECT/CT imaging also allows for serial assessment of sensitive changes in angiosome microvascular perfusion following revascularization that are undetected by ABI. Perfusion imaging with SPECT/CT offers a novel quantitative imaging approach for assessing the efficacy of revascularization strategies targeted at restoring perfusion to non-healing wounds of the foot and may assist with predicting limb salvage outcomes in CLI patients undergoing revascularization. Future application of SPECT/CT perfusion imaging may provide additional value for detection and targeting of ischemic tissue for therapeutic interventions in the PAD patient population.</p>

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</description>

<author>Jessica Buckley</author>


</item>




<item>
<title>Neuroprognostication And Withdrawal Of Life-Sustaining Therapy In Post-Cardiac Arrest Patients</title>
<link>http://elischolar.library.yale.edu/ymtdl/2110</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2110</guid>
<pubDate>Thu, 06 Jul 2017 09:35:30 PDT</pubDate>
<description>
	<![CDATA[
	<p>Withdrawal of life-sustaining therapy (WLST) due to predicted poor neurologic outcome is a major cause of death in post-cardiac arrest patients. Neuroprognostication is challenging as outcomes studies are limited by self-fulfilling prophecy bias. Given the impact of neurologic prognosis on mortality, the use of reliable, evidence-based prediction methods is critical. The purpose of this two-part study is to investigate physicians’ practical approach to neuroprognostication and WLST after cardiac arrest.</p>
<p>Part I is a single-center, retrospective analysis of a cohort of 144 post-cardiac arrest patients. Clinical findings, test results, and timing and rationale for WLST were abstracted from the medical record. Part II is a 28-question survey of physicians in the United States and abroad who manage post-cardiac arrest patients. A total of 895 respondents provided data on technique and the perceived value of each prognostic test. All data was analyzed using descriptive statistical methods.</p>
<p>WLST due to poor neurologic prognosis accounted for 61% of deaths in the single-center cohort. Results of both studies suggest that physicians used multiple modalities to assess prognosis, but often in a way inconsistent with evidence-based recommendations. Rationale for WLST referred generally to poor neurologic prognosis (e.g., “no chance of meaningful recovery”) rather than specific indicators.  WLST in the absence of rigorous prognostic indicators undermines accurate neurologic prognostication in post-cardiac arrest patients and perpetuates a self-fulfilling prophecy of poor outcome.</p>

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</description>

<author>Mary Michele Barden</author>


</item>




<item>
<title>Prediction Of Adverse Outcomes After Rt-Pa Treatment In Ischemic Stroke Patients</title>
<link>http://elischolar.library.yale.edu/ymtdl/2109</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2109</guid>
<pubDate>Thu, 06 Jul 2017 09:35:26 PDT</pubDate>
<description>
	<![CDATA[
	<p>IV thrombolysis (rt-PA) for ischemic stroke treatment carries a substantial risk for symptomatic intracerebral hemorrhage (sICH) and adverse outcome. Our purpose was to develop a computationally simple and accurate clinical predictor of adverse outcome after rt-PA therapy.</p>
<p>Our derivation dataset consisted of 210 ischemic stroke patients receiving IV rt-PA from January 2009 until July 2013 at Yale New Haven Hospital. Our validation dataset included 303 patients who received IV rt-PA during the NINDS rt-PA trial. Predictive ability and goodness of fit were quantified by odds ratios (OR) and areas under the receiver operating characteristic curve (AUROC). Patient outcomes included sICH, brain swelling, 90-day severe outcome and 90-day mortality. Severe outcome was defined as 90-day modified Rankin Scale (mRS) scores ≥ 5, 90-day Barthel Index (BI) scores < 60 and 90-day Glasgow Outcome Scale (GOS) scores > 2.</p>
<p>Out of seventeen clinical parameters tested, three were independent predictors of sICH: prestroke mRS score (OR 1.54, P = 0.02), baseline National Institutes of Health Stroke Scale (NIHSS) score (OR 1.13, P = 0.002), and platelet count (OR 0.99, P = 0.04). We combined these three parameters to form the TURNP (Thrombolysis risk Using mRS, NIHSS and Platelets) score. For added simplicity, prestroke mRS score and baseline NIHSS score were also combined to form the TURN (Thrombolysis risk Using mRS and NIHSS) score, which predicted sICH without a significant drop in OR or AUROC. TURN predicted sICH with AUROC 0.74 (0.58 – 0.90) in the derivation dataset, and AUROC 0.65 (0.54 – 0.77) in the validation dataset. In the validation dataset, TURN predicted 24-hour brain swelling with AUROC 0.69 (0.63 - 0.75), 90-day mRS ≥ 5 with AUROC 0.83 (0.77, 0.89), 90-day BI < 60 with AUROC 0.81 (0.76 – 0.86), 90-day GOS > 2 with AUROC 0.81 (0.76 – 0.86) and 90-day mortality with AUROC 0.82 (0.76 – 0.88).</p>
<p>To improve the clinical utility of TURN, we developed and tested a mobile application Risk rtPA based on TURN for predicting 90-day outcome after rt-PA treatment. Risk rtPA returned predictions of severe outcome for a range of hypothetical patients with varying clinical characteristics, demonstrating broad applicability. This mobile application brings computationally simple prediction of post-thrombolysis risk to the bedside for real-time stroke prognostication.</p>

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</description>

<author>David Asuzu</author>


</item>




<item>
<title>Derivation Of Human Trophoblast Stem Cells Through Direct Lineage Conversion</title>
<link>http://elischolar.library.yale.edu/ymtdl/2108</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2108</guid>
<pubDate>Thu, 06 Jul 2017 09:35:21 PDT</pubDate>
<description>
	<![CDATA[
	<p>The embryonic portion of the placenta originates from the trophectoderm (TE), one of the three lineages in the preimplantation blastocyst. Understanding the fundamental biology of the TE lineage is crucial for our ability to understand early pregnancy complications, infertility, and to make advances in personalized medicine for reproductive biology. The derivation of stem cells for the TE lineage in humans has proven surprisingly difficult. Here, we seek to fill this fundamental gap in knowledge by establishing stem cells for the TE through the process of lineage conversion. To better understand how TE stem cells (TSCs) form in the human embryo, we have performed transcriptome profiling of single cells isolated directly from human blastocysts. From this data, we identified fifteen transcription factors that are highly expressed specifically in TE cells. We therefore hypothesized that TSCs can be induced from human ES cells or fibroblasts by overexpressing a combination of TE-specific factors. To facilitate monitoring of the TE conversion, we used CRISPR/Cas9 mediated homologous recombination in human ES cells to fuse an mCherry reporter to the end of the endogenous GATA2/3 genes. We then overexpressed the 15 conversion factors using doxycycline (dox) inducible lentiviral constructs. Multiple mCherry+ clones with morphologies similar to those of mouse TSCs were isolated. RT-qPCR analyses of endogenous gene expression revealed that the three genes (EOMES, CDX2 and ELF5) that constitute the network for TSC self-renewal are highly induced in mCherry+ clones. Analysis of integrated transgenes revealed that EOMES and CEBPA were detected in all clones analyzed, suggesting that these two factors are required for the successful TE conversion in humans. Although our TSC-like cells can be passaged indefinitely in the presence of dox, they differentiate upon dox withdrawal, indicating that FGF4 alone is insufficient for TSC maintenance in humans. We conclude that human TSC-like cells can be obtained from hESCs via ectopic expression of key TE –specific factors. This work provides a foundation for future experiments which will include derivation of hTSCs from fibroblasts and ultimately from human embryos, determining the culture conditions that support in vitro propagation of hTSCs and their molecular and functional analyses.</p>

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</description>

<author>Michael Gerino Astudillo</author>


</item>




<item>
<title>Burdens Beget Burden: Examining The Physiological Links Between Psychological Stress And Cardiovascular Disease</title>
<link>http://elischolar.library.yale.edu/ymtdl/2107</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2107</guid>
<pubDate>Thu, 06 Jul 2017 09:35:17 PDT</pubDate>
<description>
	<![CDATA[
	<p>Introduction</p>
<p>Psoriasis is a chronic inflammatory disorder associated with both cardiovascular disease and mood disorders such as depression and anxiety.  Multiple behavioral and physiological processes link depression, psoriasis and atherosclerosis, but inflammation is a major player implicated in the pathogenesis of all three.  Psoriasis is associated with vascular inflammation, measured by 18F-fluorodeoxyglucose positron emission tomography/computed tomography (FDG PET/CT), and an increased risk of myocardial infarction.  Vascular inflammation by FDG PET/CT predicts cardiovascular risk and outcomes.  Studies have also shown that patients with psoriasis are more likely to suffer from comorbid depression and anxiety.  However, whether these comorbidities may accelerate the development of cardiovascular disease in psoriasis is not well-characterized.</p>
<p>Hypothesis</p>
<p>Our primary hypothesis is that aortic vascular inflammation and coronary plaque burden will be increased in patients with psoriasis who have depression when compared to psoriasis patients who do not.  In a follow-up study we hypothesize that metabolic activity in the anatomic location of the amygdala will correlate with increased vascular inflammation and decreased vascular function.</p>
<p>Methods</p>
<p>An ongoing psoriasis study cohort was chosen for the patient population. Patients who reported a history of depression (n=36) on survey were matched by age and sex to patients who reported no history of psychiatric illness (n=36).  FDG PET/CT scans were used to assess vascular inflammation.  From these scans, standardized uptake values were calculated by analyzing axial slices of the aorta.  Target-to-background ratios were then calculated to standardize for background luminal FDG uptake.  Coronary computed tomography angiography scans were analyzed in order to determine coronary plaque composition and to quantify plaque burden.  Multivariate linear regression analyses were performed to understand the potential effect of psychiatric diagnoses on aortic vascular inflammation and coronary plaque burden.  Traditional cardiovascular risk factors were adjusted for (standardized β reported).  In a follow-up study, metabolic activity of the amygdala was quantified via analysis of FDG uptake in the anatomic location of the amygdala.  These uptake values were divided by FDG uptake in the adjacent ipsilateral temporal lobe for standardization.  Target-to-background ratios were then used to quantify amygdala activity.  Vascular function was studied via aortic distensibility.  Using phase contrast MRI scans throughout the duration of one cardiac cycle, axial slices of the aorta were analyzed to calculate aortic distensibility.</p>
<p>Results</p>
<p>Aortic vascular inflammation and coronary plaque burden were increased in psoriasis patients with comorbid depression as compared to those without.  After adjustment for Framingham Risk Score, vascular inflammation (β=0.26, p=0.02), total plaque burden (β=0.17, p=0.03), and non-calcified plaque burden (β=0.17, p=0.03) associated with comorbid depression.  In a subsequent study, patients with comorbid depression and/or anxiety had higher left amygdala activity.  In unadjusted analyses vascular inflammation significantly associated with amygdala activity, although this relationship did not retain significance after adjustment for traditional cardiovascular risk.  Aortic distensibility was significantly and inversely associated with left amygdala activity both in unadjusted analyses and after adjustment for traditional cardiovascular risk.</p>
<p>Conclusions</p>
<p>Patients with psoriasis who suffer from comorbid depression have greater burden of subclinical cardiovascular disease.  Furthermore, vascular function is reduced in these patients and correlates with the degree of activity in the amygdala, a region of the brain that plays an important role in the modulation of stress.  Targeted assessment of psychological stress and mood disorders in psoriasis patients may be warranted for further cardiovascular risk reduction in this high-risk population.</p>

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</description>

<author>Tsion Medreke Aberra</author>


</item>




<item>
<title>Automated 3d Tumor Enhancement Analyses For Patients Undergoing Transarterial Chemoembolization (tace)</title>
<link>http://elischolar.library.yale.edu/ymtdl/2106</link>
<guid isPermaLink="true">http://elischolar.library.yale.edu/ymtdl/2106</guid>
<pubDate>Thu, 06 Jul 2017 09:35:13 PDT</pubDate>
<description>
	<![CDATA[
	<p>The aim of this thesis is to present results from two original research projects that involve computational approaches to clinical radiology with a special emphasis on hepatocellular carcinoma (HCC). The projects were undertaken sequentially and may be viewed as components of a common pipeline. They focus on the automated calculation of response-to-treatment criteria for patients with HCC who undergo transarterial chemoembolization (TACE). TACE is an endovascular procedure involving the local delivery of a chemotherapeutic or embolic agent into vessels supplying a tumor.</p>
<p>Response-to-treatment criteria are measures that radiologists use to quantify how well patients respond to therapy. Traditional response criteria are time-consuming to calculate and suffer from inter-operator variability. They are not uniformly performed despite an abundance of evidence demonstrating their value. The chief objection to their use is the time required for their manual calculation.</p>
<p>A fully automated method for response-to-treatment calculations would remove the time burden on radiologists and facilitate standardized reporting on HCC lesions. Successfull automation requires automatic liver and tumor segmentations and automatic metric calculation. Given the former (i.e. segmentations), the latter becomes straightforward.</p>
<p>The first project demonstrates a simple heuristic to fully automate the quantitative European Association for the Study of the Liver (qEASL) response criterion, assuming liver and tumor segmentations are provided. Our method automates parenchymal region-of- interest (ROI) selection and shows result equivalent to manual ROI selection achieved by the current qEASL standard.</p>
<p>The second project applies recent developments in deep learning for computer vision to the problem of automatic liver and tumor segmentation. We train a deep convolutional neural network classifier to detect liver and tumor margins in contrast-enhanced MR imaging.</p>
<p>These projects represent an end-to-end solution to tumor response criteria. They provide radiologists a straightforward method for response calculations and produce consistent, reproducible results.</p>

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</description>

<author>Aaron Christopher Abajian</author>


</item>





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